Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3337 ATGACTATGCAACTCTGCTTCTTCTTCTTGTTGTTGCTTGGTGCCTCCTCTTCTGATAAGACAACATTAAGAAAAAGTTTAAGAAAGAACAACAGTATACAAACACCATCATCTTCCAATTTTGCAGTTAAGCTTAATGAAGAAAATCATCAGCAGTTGGTGATTGACAACGGTATCGTTTCAGTAACTTTATCTATACCAGAGGGTTATGTCATTGGTGTATCCTATAACGGAATTGAGAATGTACTTGAACCTCAAAATGAAGAACAAGATAGAGGGTACTTCGATGTTGTTTGGAATGAACCAGGAAAACGCAGTATCTTTCAAAGAATCCACGGGACAAATTTTTCGGTTATAGCTTCTGACGAGAATATGGTGGAGCTTTCATTTTTAAGGGCATGGACAGCTTCCATGGAGGGCTCAAATGTCCCCATTAATATAGACATAAGGTACATTTTGCGAAGAGGTGATTCAGGATTTTATTCATATGCAATATTTGATCGGCCTGATGAAGGATTTCCAGGCGTGGAGGTTGATCAAATTAGATTTGTTTATAAGCTCTTGAAAGATAGATTCAGCTATATGGCTCTATCTAGTACGAGACAAAGAACTATGCCAACAATGAGAGACAGAGAAACAGGACAAATTCTGGCTTACCCTGAAGCCGTTCTCTTAACGAAACCAAGCAACCCTCAATTTAGAGGAGAGGTGGATGACAAATACCAATACTCATGTGAGAACAGTGAAAACAACGTTCATGGATGGATTAGCCTTCAGCCTGATGAACCGATGGGTTTTTGGATAATTACTCCTTCCAATGAATTCCGCAATGGTGGCCCCATCAAGCAAGACCTCACTTCTCACGTTGGCCCCTTCACTCTTTCTATGTTTGTCAGCACTCACTATGCTGGCAAAGAAGTAACCATGTCTTTCCAACAAGGCGACACTTATAAAAAGGTTTTTGGACCTGTTTTTGTCTATCTTAACTCTGCTTCAATCTCCGATGATCCCTTGTCTCTTTGGTCAGATGCTATTAACCAGCTCTCCAAAGAAGTCGAAGCCTGGCCTTACGATTTTCCACTATCACCAGATTACTTTCCACCCGATCAACGAGGAACAGTGTTAGGAAGATTGTTAGTCCAAGATTGGTGTGTTAAGGGTGGGAGATTGCAGTATGCTAACAATGCTTATGTTGGCCTAGCATTACCTGGAGATGCAGGATCATGGCAGAAAGAGAGCAAGGGTTACCAATTTTGGACTCAAGCTGATTCCAAAGGATACTTTGCAATTAAAAATGTTGTACCTGGGGATTATAACTTGTATGCTTGGGTACCTGGCTTTATTGGTGATTACAAATATAATTCTACAATCACAATAACACCAGGAGGAGTCATCAAATTGGATCAACTTGTATATAGTCCTCCTAGAAATGGACCAACCATATGGGAAATTGGTATCCCAGACAGAACAGCCGTAGAGTTCTACGTACCAGATCCTTACCCTACTCTCATGAACAAATTATACACTGAACAACGCAAAGACAAGTTTAGGCAATATGGGTTGTGGGAACGTTATTCTGACATGTATCCAAATGAAGATCTTGTTTACACTGTTGGTGTCAACAAGTACAATAGGGATTGGTTTTATGCCCATGTTACAAGGAATATGGGGAATAAGACATACGAACCAACAACGTGGCAAATTATATTTGAACATCGCAATGACATAATAGAAGGGAATTACACACTACAATTAGCCCTAGCATCTGCTGCTGATGCTGAACTTCAGGTTCGATTCAATGATCCAAGTGTTTATCCTGCCCACTTTGGAACAGGGCCAATAGGAGGAGATAATGCCATAGCAAGACATGGAATCCATGGATTGCATAGGCTGTATAGTATTGATGTGCCTAGTCATCATTTTGTGAAAGGAAAGAATATCATTTATCTGAGACAGTCTAGAGCTATAAACCAATTTCAAGGAGTTATGTATGATTATATCCGTTTAGAAAGACCACCAAACCCAACCAATTGA 2034 0.4002 MTMQLCFFFLLLLGASSSDKTTLRKSLRKNNSIQTPSSSNFAVKLNEENHQQLVIDNGIVSVTLSIPEGYVIGVSYNGIENVLEPQNEEQDRGYFDVVWNEPGKRSIFQRIHGTNFSVIASDENMVELSFLRAWTASMEGSNVPINIDIRYILRRGDSGFYSYAIFDRPDEGFPGVEVDQIRFVYKLLKDRFSYMALSSTRQRTMPTMRDRETGQILAYPEAVLLTKPSNPQFRGEVDDKYQYSCENSENNVHGWISLQPDEPMGFWIITPSNEFRNGGPIKQDLTSHVGPFTLSMFVSTHYAGKEVTMSFQQGDTYKKVFGPVFVYLNSASISDDPLSLWSDAINQLSKEVEAWPYDFPLSPDYFPPDQRGTVLGRLLVQDWCVKGGRLQYANNAYVGLALPGDAGSWQKESKGYQFWTQADSKGYFAIKNVVPGDYNLYAWVPGFIGDYKYNSTITITPGGVIKLDQLVYSPPRNGPTIWEIGIPDRTAVEFYVPDPYPTLMNKLYTEQRKDKFRQYGLWERYSDMYPNEDLVYTVGVNKYNRDWFYAHVTRNMGNKTYEPTTWQIIFEHRNDIIEGNYTLQLALASAADAELQVRFNDPSVYPAHFGTGPIGGDNAIARHGIHGLHRLYSIDVPSHHFVKGKNIIYLRQSRAINQFQGVMYDYIRLERPPNPTN* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3337 677 Pfam Polysaccharide lyase family 4, domain II 394 466 IPR029413 -
Ahy3g3337 677 Gene3D - 477 670 - -
Ahy3g3337 677 SUPERFAMILY Starch-binding domain-like 365 469 IPR013784 GO:0030246
Ahy3g3337 677 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 46 673 - -
Ahy3g3337 677 CDD RGL4_C 482 670 - -
Ahy3g3337 677 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 46 673 - -
Ahy3g3337 677 Pfam Rhamnogalacturonate lyase family 38 237 IPR010325 -
Ahy3g3337 677 CDD RGL4_N 52 340 - -
Ahy3g3337 677 SUPERFAMILY Galactose-binding domain-like 477 670 IPR008979 -
Ahy3g3337 677 CDD RGL4_M 370 467 IPR029413 -
Ahy3g3337 677 Gene3D - 367 468 - -
Ahy3g3337 677 Pfam Polysaccharide lyase family 4, domain III 480 669 IPR029411 -
Ahy3g3337 677 Gene3D - 42 348 IPR014718 GO:0030246
Ahy3g3337 677 SUPERFAMILY Galactose mutarotase-like 48 336 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3337 Ahy-Chr3 131870584 131877416 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3337 53 674 Polysaccharide Lyase AT1G09910 56.090 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3337 K18195 - gmx:100776664 1073.92