Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3273 ATGGTTTTGTCTTGGACCAAAAGAAAGGTCTTCCGCCATCTCCGTAAGGTGACAAAGGAGGATCAACCTCCCTCCGCCGATGACATTGTCATCCCCGTGCACTTTTGCTGCCCAGTGAGCTTGGACATTATGAAAGACCCCGTTACCCTCTCAACCGGCATAACCTACGACAGGGACAGCATCGACAAGTGGCTTGAATCCGGTAACAACACCTGCCCCGTCACCAAACAGCTCCTAACTACCTCCGACATGATCCCCAACCACGCCATCAGAAAGATGATTCAGGATTGGTGCGTCGATAACAGCTCCCATGGCGTCCAGAGGATCCCCACTCCTAGGGTTCCCCTTTCCAGATACGACGTTTCCCGGGAATGTAAGACCTTGTTGTCCGGTTCACAGCACGGTGATGACGCCACGTGTCGGGAATCTTTGGCCAAGATCAAGGCTTGGGGGAAGGAGAACGAGAGGAACAAGAGGTGCGTCGTTGGCAACGGTTCCGCTGATGTACTCGCACGTGCGTTTCAGAATTTCTCACGTGATTCGTTCGACAAGCACGTGGTTGTCTTGGCAGAGATTTTGGAGAATCTGACGTGGATGCTTCCTATTGGCGAAGAGGGTAAAGGGTGTTTGGGCTCGGAAAATTCGTTGACTCGGTTGGTTTTGTTCCTAGGTGGTAATGACCTTGGAGCAAGACAAGGTGCTTCTTTGGTGATTAAGGAGCTAAGTGCTGAAGCACTGGAGAAAAATGAACAACTTGTTGAGTCTTTGGTTAAGATGATTAGGGAGCCAATTGGTCCAATTGCTACAAAATCATGTTTGGCCACAATTTTCAATTTGGTTTCATTAGCACAAAGTAGAGAACTAATTGCAGAGAGATTTGTGGAATTAGGTTTGGTCTCATTGCTGTTGGATATCATTCTTGATGGTGAAAGAGGGATAACTGAGAAGGCATTGGGGGTCTTGGATTCCATTTGTGATTTCCAAAAGGGGAAGGATTTTGCCAAGAGCAATGCTCTAATGGTTCCCCTTGCAATCAAGAAGATCTTGAGGGTGTCAGAATTGGCCTCTAGCTTTGCGGTTTCTATACTTTGGAAGGTGTGGGATAAGAGTGATGAAGGGGCTCTGATTGAGGCCCTTCAAGTTGGTGCCTTTCAGAAATTGTTGGTTGTGTTGCAAGTTGGTTGTGATGATAGCACTAAGGAGAAGGCTACTGAGTTGCTCAAACTGTTGAATGCTTATCGAGGCAAGGCACAGTGTGTTGATTCTTCTTCATTGGAACTCAACTACCTTAAGAAGTCATTCTAA 1305 0.4728 MVLSWTKRKVFRHLRKVTKEDQPPSADDIVIPVHFCCPVSLDIMKDPVTLSTGITYDRDSIDKWLESGNNTCPVTKQLLTTSDMIPNHAIRKMIQDWCVDNSSHGVQRIPTPRVPLSRYDVSRECKTLLSGSQHGDDATCRESLAKIKAWGKENERNKRCVVGNGSADVLARAFQNFSRDSFDKHVVVLAEILENLTWMLPIGEEGKGCLGSENSLTRLVLFLGGNDLGARQGASLVIKELSAEALEKNEQLVESLVKMIREPIGPIATKSCLATIFNLVSLAQSRELIAERFVELGLVSLLLDIILDGERGITEKALGVLDSICDFQKGKDFAKSNALMVPLAIKKILRVSELASSFAVSILWKVWDKSDEGALIEALQVGAFQKLLVVLQVGCDDSTKEKATELLKLLNAYRGKAQCVDSSSLELNYLKKSF* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3273 434 Gene3D - 119 414 IPR011989 -
Ahy3g3273 434 SUPERFAMILY RING/U-box 19 106 - -
Ahy3g3273 434 CDD RING-Ubox_PUB 35 77 IPR045210 -
Ahy3g3273 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 109 IPR013083 -
Ahy3g3273 434 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 28 434 - -
Ahy3g3273 434 SUPERFAMILY ARM repeat 128 405 IPR016024 -
Ahy3g3273 434 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Ahy3g3273 434 PANTHER WDSAM1 PROTEIN 28 434 IPR045185 GO:0061630
Ahy3g3273 434 Pfam U-box domain 31 102 IPR003613 GO:0004842|GO:0016567
Ahy3g3273 434 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3273 Ahy-Chr3 131102965 131104653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3273 20 434 U-box Gene Family AT5G37490 45.735 2.14e-114 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3273 - - gmx:548086 537.724