Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3271 ATGAGTTCTTCTTCGTCTAACCAAGTGGCCAAGGCTAAGAAAGTGAAGAAAGCTCTTCAGCCAGAGTGGCTTAAGTCTCTTCTGAAAAGGACTTTCTTTGAATCTTCCTGTGCAACACATCCTGTGCTTAAGAATGAGTTAAACCAATACTGTGTAACCTGTACTGAGCTAATTTGCCAAAATTGTGCATCTGGACCCAAACATGTTCTTCATAAGCTGATCACAATCTACAAGCATAGTTACAAAGCTGTTGTTCGCATTGATGCTATGAGAGAGCATATTGACTGCTCACAAATTCAGGCTAAGAAAGTGAAGAAAGCTCTTCAGCCGGAGTGGCTTAAGTCTCTTCTGAAAAGGACTTTCTTTGAATCTTCCTGTGCAACTCATCCTGTGCTTAAGAATGAGTTAAACCAATACTGTGTAACCTGTACTGAGCTAATTTGCCAAAATTGTGCATCTGGACCCAAACATGTTCTTCATAAGGTGATCACAATCTACAAGCATAGTTACAAAGCTGTTGTTCGCATTGATGCTATGAGAGAGCATATTGACTGCTCACAAATTCAGCCTTACAAATCCAATAAGCTTTCCGTTATTGCTCTGGAGCCTCTTCCGCACCATGGTTCTGTAAAATGGAGAAGGGCATCATCATGCAAGACCTGTAGGAGAAAGTTGGCCAACCCCAATTTATATCGTTACTGCTCCATATCTTGCAAGGTCCAAGCTGTTTTAAAGAAGTCTGATCATTCAGTTCCTCCCTTCATTTTGCTTAAGGAGGATCAAAAGGAGGAAGCTGGAACCAGCAAGCGGGTAAATAAGAGAAAGGGAACCCCTGCCAGAGCTCCCTTCTTCTAA 855 0.4187 MSSSSSNQVAKAKKVKKALQPEWLKSLLKRTFFESSCATHPVLKNELNQYCVTCTELICQNCASGPKHVLHKLITIYKHSYKAVVRIDAMREHIDCSQIQAKKVKKALQPEWLKSLLKRTFFESSCATHPVLKNELNQYCVTCTELICQNCASGPKHVLHKVITIYKHSYKAVVRIDAMREHIDCSQIQPYKSNKLSVIALEPLPHHGSVKWRRASSCKTCRRKLANPNLYRYCSISCKVQAVLKKSDHSVPPFILLKEDQKEEAGTSKRVNKRKGTPARAPFF* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3271 284 SUPERFAMILY B-box zinc-binding domain 125 173 - -
Ahy3g3271 284 CDD Bbox2 37 76 - -
Ahy3g3271 284 PANTHER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 105 284 - -
Ahy3g3271 284 SUPERFAMILY B-box zinc-binding domain 36 83 - -
Ahy3g3271 284 CDD Bbox2 126 165 - -
Ahy3g3271 284 Pfam PLATZ transcription factor 167 240 IPR006734 -
Ahy3g3271 284 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 9 106 - -
Ahy3g3271 284 Pfam B-box zinc finger 124 165 IPR000315 GO:0008270
Ahy3g3271 284 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 105 284 - -
Ahy3g3271 284 SMART bboxneu5 121 165 IPR000315 GO:0008270
Ahy3g3271 284 SMART bboxneu5 32 76 IPR000315 GO:0008270
Ahy3g3271 284 Gene3D Classic Zinc Finger 23 106 - -
Ahy3g3271 284 Gene3D Classic Zinc Finger 112 185 - -
Ahy3g3271 284 PANTHER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 9 106 - -
Ahy3g3271 284 ProSiteProfiles Zinc finger B-box type profile. 37 76 IPR000315 GO:0008270
Ahy3g3271 284 MobiDBLite consensus disorder prediction 262 284 - -
Ahy3g3271 284 ProSiteProfiles Zinc finger B-box type profile. 126 165 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3271 Ahy-Chr3 131084381 131094335 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Ahy3g3271 PLATZ 1.20E-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3271 - - ahf:112791659 567.385