Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3258 ATGGGAAGGCAACCATGCTGTGATAAAGTTGGGTTGAAGAAGGGGCCATGGACTGCAGAGGAGGACAAGAAGCTGATCAACTTCATCCTCACCAATGGCCAATGTTGCTGGAGAGCTGTCCCTAAACTTGCAGGCTTGTTAAGGTGTGGTAAAAGTTGTAGGCTTCGGTGGACAAATTACCTCAGGCCAGACTTGAAAAGAGGCCTTCTATCAGAATATGAGGAGAAAATGGTCATTGACCTCCATGCTCAATTAGGCAACAGGTGGTCTAAGATTGCTTCACATCTGCCTGGAAGAACTGATAATGAGATCAAGAATCATTGGAACACCCACATCAAGAAAAAGCTCAAGAAATTGGGAATTGATCCTGTCACACACAAGCCACTCTCTAATAACACCACTGACCAAAATCAAATCAAACCAGAACAACCACCACTTCAAGAGCAAGAACAAGATCATCATGAGTCTTCCATAATTGTTGAACCTGAAATTAAGGAGGCAGAGAAGCCTGAGGCAGAGGATCAATTCATGACCCCACTGTTTGAATCAATGGACACAATAATGATGAATGGTTTCTGTACAGATGAAGTTCCAATTTTAGAACCTGATGAGATCCTTGCTCCATGTGCTGGTGATGCTTCTACTTCATCAACAGCAACAACCACTTCTTCATCATCATCATCATCTTCTTCTGATTCTTATTCAAATAATCCATCATCCAAGTTCCTTGAAGACCTTCTTCTCTCAGATTCTGAGTGGTCCAATGACAATAACAACAACTACTATAGCAGCATGGCCTTATGGGATGATGATGACTTCATTAGCAGTTTGGATATGCTTCTTAATGATGATTATTATGACAGTGACAGAAAACAGCAGCAGCAACCTTTTGATGCTTCACTGAATCAGTACCCAAGAATGATCATGGATTCATCAGAATCTTGGGCTTATGGCTTGTTTTGA 963 0.4164 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKLGIDPVTHKPLSNNTTDQNQIKPEQPPLQEQEQDHHESSIIVEPEIKEAEKPEAEDQFMTPLFESMDTIMMNGFCTDEVPILEPDEILAPCAGDASTSSTATTTSSSSSSSSSDSYSNNPSSKFLEDLLLSDSEWSNDNNNNYYSSMALWDDDDFISSLDMLLNDDYYDSDRKQQQQPFDASLNQYPRMIMDSSESWAYGLF* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3258 320 Gene3D - 11 67 - -
Ahy3g3258 320 SMART sant 66 114 IPR001005 -
Ahy3g3258 320 SMART sant 13 63 IPR001005 -
Ahy3g3258 320 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ahy3g3258 320 CDD SANT 16 61 IPR001005 -
Ahy3g3258 320 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Ahy3g3258 320 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ahy3g3258 320 MobiDBLite consensus disorder prediction 211 237 - -
Ahy3g3258 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ahy3g3258 320 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 286 - -
Ahy3g3258 320 MobiDBLite consensus disorder prediction 208 237 - -
Ahy3g3258 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ahy3g3258 320 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ahy3g3258 320 CDD SANT 74 112 IPR001005 -
Ahy3g3258 320 MobiDBLite consensus disorder prediction 126 145 - -
Ahy3g3258 320 Gene3D - 70 155 - -
Ahy3g3258 320 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ahy3g3258 320 PANTHER PROTEIN ODORANT1-LIKE 2 286 - -
Ahy3g3258 320 MobiDBLite consensus disorder prediction 123 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3258 Ahy-Chr3 130733691 130735394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3258 1 320 MYB Transcription Factor Family AT5G16600 49.856 3.92e-101 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy3g3258 Myb_DNA-binding 9.20E-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3258 K09422 - gmx:100803624 395.586