LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy3g3161	ATGGATCTCTCCAAGAAGCGTAAAACGGACCAGAACGGCGACGCTGATTCCTCGCCTTCACAACAACCTCCCCCTTCCACCTCCCTCTCCGCAGACGACATCCGCAAGATCCTGCAACCCTTCACGCACGAGCAGCTCATCGACCTCCTCCAGTCAGCGTCCCTCCGCCACCCCGACGTCTTCGACTCTGTCCGCTCCGTCGCCGACCGCGACTCCACACTCCGAAAGCTATTCGTCCGCGGCCTCGCCGCCGACACCACCACGGACACTATCCGCGCCATCTTCTCTGCCTACGGCGACCTAGACGAAGCCATCGTCATCTTCGACAAGAACACCGGAAAATCCAAGGGCTACGGCTTCGTCACTTTCTCCCACGTCGACGGCGCTGTCCTCGCCCTCAAGGATCCCAGCAAGAAAATCGACGGCCGCATGACCGTCACGCAGCTTGCCGCCTCCGGCGGACCCGGAGCCGCCTCAGCTACCGACGTAGCCGCACGGAAGGTGTTTGTAGGTAACGTCCCATTCGAAATCCCATCGGAGAGGCTCTTGAGCCACTTTCTTGCATACGGTGAGGTAGAAGAAGGTCCTTTAGGGTTTGATAAGAGTAGCGGTAAAACAAGAGGGTTTGCGTTCTTCGTGTACAAGACTGAAGAAGGTGCTAGGGCTTGTTTGGCAGAGCCAACGAAGACAATTGATGGCCACCAAGTGTTCTGCAAGTTGGCTGTGGATAACAAGAAAGCGAAGCCGCAGAATCCTGCTTCTGGTTTCCCAGGGGATGGTATGCATGCTCAGCAGCAACAGCAACAGCAACCTCAACCTTCTTACAATGCTCCTATGCTGATTTCTCAGTACGGTGGATATGCTGGCGGTGGTGGGCATGGCAACGGATATGGGATGCAGCCTTCGGTGCCGTCGTATGGGAACCCTGTTCCAGCTGCTGCTGCTGGTGTTGGTGGGTATGGGGCTACGGTTGGTGGGGGCGGTTATGGGAATTCGCAGTATGGCGGGCCGGTTTCCGGCGAGTATGGTGCGAGGTTGCCTCCTACGTCCGGTGGAGTACCCTCTGGTGGGTTTATGGATGGCTCCCATTATGGTGGTTTACCTTCGTCTGCAATTCCGTCACAACAGCCGCAGCCTGTTCCGATGCCAAGACCTGCCCCTCCTGGAGGAATGTACCAAGGCGTGCCGCCCTATTACTGA	1200	0.5742	MDLSKKRKTDQNGDADSSPSQQPPPSTSLSADDIRKILQPFTHEQLIDLLQSASLRHPDVFDSVRSVADRDSTLRKLFVRGLAADTTTDTIRAIFSAYGDLDEAIVIFDKNTGKSKGYGFVTFSHVDGAVLALKDPSKKIDGRMTVTQLAASGGPGAASATDVAARKVFVGNVPFEIPSERLLSHFLAYGEVEEGPLGFDKSSGKTRGFAFFVYKTEEGARACLAEPTKTIDGHQVFCKLAVDNKKAKPQNPASGFPGDGMHAQQQQQQQPQPSYNAPMLISQYGGYAGGGGHGNGYGMQPSVPSYGNPVPAAAAGVGGYGATVGGGGYGNSQYGGPVSGEYGARLPPTSGGVPSGGFMDGSHYGGLPSSAIPSQQPQPVPMPRPAPPGGMYQGVPPYY*	400

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy3g3161	399	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	166	254	IPR000504	GO:0003723
	Ahy3g3161	399	MobiDBLite	consensus disorder prediction	1	30	-	-
	Ahy3g3161	399	Gene3D	-	158	275	IPR012677	-
	Ahy3g3161	399	SUPERFAMILY	RNA-binding domain, RBD	64	155	IPR035979	GO:0003676
	Ahy3g3161	399	MobiDBLite	consensus disorder prediction	340	399	-	-
	Ahy3g3161	399	Gene3D	-	2	157	IPR012677	-
	Ahy3g3161	399	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	168	235	IPR000504	GO:0003723
	Ahy3g3161	399	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	77	143	IPR000504	GO:0003723
	Ahy3g3161	399	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	75	152	IPR000504	GO:0003723
	Ahy3g3161	399	MobiDBLite	consensus disorder prediction	260	277	-	-
	Ahy3g3161	399	SUPERFAMILY	RNA-binding domain, RBD	162	260	IPR035979	GO:0003676
	Ahy3g3161	399	MobiDBLite	consensus disorder prediction	248	277	-	-
	Ahy3g3161	399	MobiDBLite	consensus disorder prediction	14	30	-	-
	Ahy3g3161	399	CDD	RRM_RBM24_RBM38_like	75	150	-	-
	Ahy3g3161	399	PANTHER	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	1	363	-	-
	Ahy3g3161	399	SMART	rrm1_1	167	239	IPR000504	GO:0003723
	Ahy3g3161	399	SMART	rrm1_1	76	148	IPR000504	GO:0003723
	Ahy3g3161	399	MobiDBLite	consensus disorder prediction	374	399	-	-
	Ahy3g3161	399	PANTHER	GEO13361P1-RELATED	1	363	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy3g3161	Ahy-Chr3	129221534	129225253	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy3g3161	162	307	C2H2 Transcription Factor Family	AT2G19380	29.545	1.38e-12	67.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy3g3161	K12741		-	gmx:100804230	440.654