Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3091 ATGGACACTAGCAGGGCTGAAGGGAAGAGAACCTTGCTGAGGTACAAAGAGGAGGAGGAGGAGGAGGACGACGAGGAGACTGAGGAGGAAGAGGAAGAAGACACGGGGGGTTATGGAGAAGAATATGGTGGTGGTGGGAGGAGGAAGAGGGCAATGACAGATCTCATGAGCAGCAAGAGAGGCTTCAAAGGTGGAGGAGGTTCGTCAATGCCACCGTCATGTCAGGTGGACGGCTGTGACTCTGATCTGAGCAAGGGAAAGCAGTATCATCGAAGACATAAGGTTTGTGAGAACCATGCCAAGGCTCCTTCCGTACACATTTCAGGACAACAACAAAGGTTTTGCCAACAATGCAGCAGATTTCATGAGCTTTCGGAGTTTGATGACTCAAAACGAAGCTGTAGGAGACGTTTGGCGGGGCATAATGAAAGGCGTCGCAAAAATGCAATTGAGTACCATGGAGAATGA 468 0.5 MDTSRAEGKRTLLRYKEEEEEEDDEETEEEEEEDTGGYGEEYGGGGRRKRAMTDLMSSKRGFKGGGGSSMPPSCQVDGCDSDLSKGKQYHRRHKVCENHAKAPSVHISGQQQRFCQQCSRFHELSEFDDSKRSCRRRLAGHNERRRKNAIEYHGE* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3091 155 Coils Coil 12 35 - -
Ahy3g3091 155 Pfam SBP domain 74 147 IPR004333 GO:0003677
Ahy3g3091 155 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 18 148 IPR044817 GO:0003677
Ahy3g3091 155 MobiDBLite consensus disorder prediction 1 17 - -
Ahy3g3091 155 Gene3D - 64 135 IPR036893 GO:0003677|GO:0005634
Ahy3g3091 155 ProSiteProfiles Zinc finger SBP-type profile. 71 148 IPR004333 GO:0003677
Ahy3g3091 155 PIRSF SBP 1 155 IPR017238 GO:0003677|GO:0003700|GO:0009908
Ahy3g3091 155 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 18 148 - -
Ahy3g3091 155 SUPERFAMILY SBT domain 72 152 IPR036893 GO:0003677|GO:0005634
Ahy3g3091 155 MobiDBLite consensus disorder prediction 1 82 - -
Ahy3g3091 155 MobiDBLite consensus disorder prediction 18 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3091 Ahy-Chr3 128272479 128274248 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3091 65 151 SBP-box Gene Family AT2G33810 68.966 5.28e-41 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ahy3g3091 SBP 2.80E-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3091 - - aip:107631217 229.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3357 13 130693461 130695245 Ahy3g3091 3 128272479 128274248 hybridization
Ahy3g3091 3 128272479 128274248 Ahy20g0431 20 4355353 4356806 PCT
Ahy3g3091 3 128272479 128274248 Ahy10g0253 10 2261111 2262384 PCT