Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3087 ATGAAGTTCAACATTGCTAATCCCACTACTGGATGCCAGAAGAAGCTCGAGATCGACGATGACCAGAAGCTACGTGCATTTTGGGACAAGAGGATCTCACAGGAGGTCCTTGGTGATGCTCTTGGAGAGGAATTCAAAGGCTATGTCTTCAAAATCACTGGTGGCTGTGACAAGCAAGGATTCCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGTCTTTTGCTTCACAGAGGAACTCCTTGCTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGGAGAAAGTCTGTTCGCGGGTGCATTGTCAGCCCTGATCTCTCAGTTTTGAACTTGGTGATTGTGAAGAAGGGTGACAATGATCTTCCCGGCCTGACTGATGTTGAGAAGCCAAGGATGAGGGGGCCAAAGAGAGCATCCAAAATCCGCAAGCTGTTCAACCTCTCAAAGGAGGATGATGTGAGGAAGTATGTTAACACCTACCGCAGAACCTTTACAACCAAAAATGGCAAAAAGGTGAGCAAGGCTCCTAAGATACAAAGACTGGTGACACCTTTGACACTCCAAAGGAAGCGAGCAAGGATTGCTGACAAGAAGAAGAGAATTGCCAAGGCCAAGTCAGAAGCAGCAGAGTATCAGAAGTTGCTTGCATCGAGGTTGAAGGAACAGAGGGAGCGCCGTAGTGAGAGCTTGGCCAAGAGGAGATCCAAGCTTTCCAGTGCGGCTGCCAAGGCAACTGCGTAG 747 0.4926 MKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGDNDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKLSSAAAKATA* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3087 248 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Ahy3g3087 248 MobiDBLite consensus disorder prediction 219 235 - -
Ahy3g3087 248 PANTHER 40S RIBOSOMAL PROTEIN S6 1 244 - -
Ahy3g3087 248 Gene3D - 133 234 - -
Ahy3g3087 248 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Ahy3g3087 248 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Ahy3g3087 248 PANTHER 40S RIBOSOMAL PROTEIN S6 1 244 IPR001377 GO:0003735|GO:0005840|GO:0006412
Ahy3g3087 248 Coils Coil 189 216 - -
Ahy3g3087 248 PIRSF RPS6e 1 248 IPR014401 GO:0003735|GO:0005840|GO:0006412
Ahy3g3087 248 MobiDBLite consensus disorder prediction 219 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3087 Ahy-Chr3 128224153 128226120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3087 1 248 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 72.581 8.67e-121 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3087 K02991 - gmx:100801194 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3354 13 130617543 130619524 Ahy3g3087 3 128224153 128226120 hybridization
Ahy3g3087 3 128224153 128226120 Ahy20g0436 20 4433833 4435776 PCT
Ahy3g3087 3 128224153 128226120 Ahy10g0257 10 2329433 2331789 PCT
Ahy20g0436 20 4433833 4435776 Ahy3g3087 3 128224153 128226120 PCT
Ahy10g0257 10 2329433 2331789 Ahy3g3087 3 128224153 128226120 PCT