Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3072 ATGATGCAGATTGATGAAATCAAGACACAGCAAGTAGTAGGAGAAGACGACGATGGCCCGCCACCGGGTTGGCAACCCATCCATACGCCACCGCCACAACCGCCTCCACAGTCACAGTCACGGTCACGGTCACCACCTCGATGTCCATCCAATTTGGGTCAAATAGTTTGTGGGTCTTGCCATCGCCTGCTTGCATATCAGCGAGGTGCCAAACATGTCCAATGTGTGAGCTGTCAGACAGTTAACATTGTATTAGAGGCTGATCAGGTTGGACAAGTTAAGTGTGGGGGCTGTGCAGTATTGCTAATGTACCCATATGGTGCTCCACAAGTTAGGTGTTCCTCATGTCGATTTGTGACAGAAATTGGGGCACACAACAAGCGACCTCCATGGTCTGAACAACAAAGGAAACCAACCCTACCTAAAACTGCTTGTTAG 438 0.4954 MMQIDEIKTQQVVGEDDDGPPPGWQPIHTPPPQPPPQSQSRSRSPPRCPSNLGQIVCGSCHRLLAYQRGAKHVQCVSCQTVNIVLEADQVGQVKCGGCAVLLMYPYGAPQVRCSSCRFVTEIGAHNKRPPWSEQQRKPTLPKTAC* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3072 145 Pfam LSD1 zinc finger 95 119 IPR005735 -
Ahy3g3072 145 Pfam LSD1 zinc finger 57 81 IPR005735 -
Ahy3g3072 145 PANTHER PROTEIN LSD1 6 140 IPR040319 -
Ahy3g3072 145 MobiDBLite consensus disorder prediction 1 49 - -
Ahy3g3072 145 MobiDBLite consensus disorder prediction 23 42 - -
Ahy3g3072 145 PANTHER PROTEIN LOL2 6 140 - -
Ahy3g3072 145 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 92 120 IPR005735 -
Ahy3g3072 145 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 54 84 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3072 Ahy-Chr3 127923863 127925744 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Ahy3g3072 zf-LSD1 2.30E-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3072 - - gmx:100780865 180.259