Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3070 ATGGCCTTTGATCATAACTACTATTCCCGGGGATGTAAAACTCTGCCACATTCCCTTATAGACACAGAAAATTATAACAATTCCAATGGTTGTTTTGATTGCAACATATGCTTAGACTTTGCAAACGAGCCAGTTGTCACGCTTTGTGGCCATCTCTACTGCTGGCCCTGCATCTACAAATGGCTCCATGTCCAGAGCGCTTCCCTTGCCTACAACCAGCAGCCGCTATGCCCTGTCTGCAAAGCTGAAATATCCCATGCCACGATGGTTCCCCTATACGGCCGTGGCCACAGCAACCGTGAAGAGAAGGCGGCCTCATGCAGGGACATTTGTGTCCCGCCGAGGCCACCTGCTTCCGGTCCCCTGTCTTTGCTGTCCATGTCTCAAAATGGCCAGCAGCGGCTTCCTTATCGGAATCCTTACCAGGGTCAACACTTTAGCCTTGCGCAAGAGGAGGACAACGCTTCGCAAATGCTGAATCTTGGTGCTTCTGTAACGCCGGCATTCCTCCCCCACCCTATGGTTGGAATGTTTGGGGAGATGTTCTACACCAGAGTGTTTGGCAACTCAGAAAGTTTGTATGGATACCCAAATTCTTATCACACGATGGGAAGTATTAGCCCTAGGTTGAGAAGGCAAGAGATGCAGGCAGATAAGTCATTGAACAGAATCTCCATTTTCCTGCTATGTTGCTTTATTCTATGTCTTATTGTCTTTTGA 720 0.4847 MAFDHNYYSRGCKTLPHSLIDTENYNNSNGCFDCNICLDFANEPVVTLCGHLYCWPCIYKWLHVQSASLAYNQQPLCPVCKAEISHATMVPLYGRGHSNREEKAASCRDICVPPRPPASGPLSLLSMSQNGQQRLPYRNPYQGQHFSLAQEEDNASQMLNLGASVTPAFLPHPMVGMFGEMFYTRVFGNSESLYGYPNSYHTMGSISPRLRRQEMQADKSLNRISIFLLCCFILCLIVF* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3070 239 Pfam Zinc finger, C3HC4 type (RING finger) 34 80 IPR018957 GO:0046872
Ahy3g3070 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 6 239 - -
Ahy3g3070 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 94 IPR013083 -
Ahy3g3070 239 CDD RING-HC_AtRMA_like 32 82 - -
Ahy3g3070 239 SMART ring_2 34 80 IPR001841 -
Ahy3g3070 239 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Ahy3g3070 239 ProSiteProfiles Zinc finger RING-type profile. 34 81 IPR001841 -
Ahy3g3070 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 6 239 IPR045103 GO:0005783|GO:0006511|GO:0061630
Ahy3g3070 239 SUPERFAMILY RING/U-box 30 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3070 Ahy-Chr3 127918213 127919941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3070 22 225 C3H Transcription Factor Family AT4G27470 41.364 6.23e-44 146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3338 13 130410657 130412397 Ahy3g3070 3 127918213 127919941 hybridization
Ahy3g3070 3 127918213 127919941 Ahy20g0462 20 4683220 4685302 PCT
Ahy3g3070 3 127918213 127919941 Ahy10g0279 10 2520374 2522350 PCT
Ahy20g0462 20 4683220 4685302 Ahy3g3070 3 127918213 127919941 PCT
Ahy10g0279 10 2520374 2522350 Ahy3g3070 3 127918213 127919941 PCT