Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3060 ATGTACGTTAATTCCATGAGAAAGTCCTTCAAGGACTCCCTCAAGCTCCTTGAAGCTGATATTCAACACGCCAATACCCTGGCGTCAGATTTTTCAAGGGAGTATGATGGTGCATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACCTCTTTCTTTTTTTGGTGCAATGGACTGATTGTCACCTTGCGGGAGCCCTGGGATTGTTGAGAATCCTAATTTACAAGGTTTATGTGGATGGGACAACCACCATGTCTACCCAGGAAAGAAAAGCAAGTATTAGAGAATTCTATGCGGTCATATATCCCTCTTTGTTGCAACTTCAAAAGGGGGTCACTGATATGGAGGATAAGAAACAAAAGGCTGTGTGCATGGAGAGGTATCGTAAAAGAGATGATGAGGAGCATTGGCAGTCTTCTGACATAGACATTGAAAGAGAAGATGAATGTGGGATATGCATGGAAATGAATGGCAAAGTTGTGTTGCCCAACTGCAATCATGCCATGTGCCTGAAATGTTACCGAGAATGGCGAACAATCTCTCAGTCATGCCCATTTTGCCGAGACAGTCTGAAGAGGGTAAACTCTGGCGATCTCTGGGTTTTCACTGACAGGAGAGACATAGTAGATATGGCAACAGTGACAAGGGAGAATCTTAGAAGGCTTTGTATGTACATAGACAAGTTGCCTTTGGTTGTTCCGGACTCCTTTTTTGAGGCCTATGACTCTCACATAAGGTAA 744 0.4395 MYVNSMRKSFKDSLKLLEADIQHANTLASDFSREYDGACLQMRMSYSPAAHLFLFLVQWTDCHLAGALGLLRILIYKVYVDGTTTMSTQERKASIREFYAVIYPSLLQLQKGVTDMEDKKQKAVCMERYRKRDDEEHWQSSDIDIEREDECGICMEMNGKVVLPNCNHAMCLKCYREWRTISQSCPFCRDSLKRVNSGDLWVFTDRRDIVDMATVTRENLRRLCMYIDKLPLVVPDSFFEAYDSHIR* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3060 247 SUPERFAMILY RING/U-box 140 194 - -
Ahy3g3060 247 PANTHER RING FINGER PROTEIN 41, 151 4 246 - -
Ahy3g3060 247 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
Ahy3g3060 247 PANTHER PEROXISOME BIOGENESIS FACTOR 10-LIKE 4 246 - -
Ahy3g3060 247 SMART ring_2 151 188 IPR001841 -
Ahy3g3060 247 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Ahy3g3060 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 197 IPR013083 -
Ahy3g3060 247 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3060 Ahy-Chr3 127851983 127855712 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3060 K25840 - gmx:100777318 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3330 13 130347470 130351173 Ahy3g3060 3 127851983 127855712 hybridization
Ahy3g3060 3 127851983 127855712 Ahy20g0472 20 4805876 4808560 PCT
Ahy3g3060 3 127851983 127855712 Ahy10g0289 10 2571409 2574100 PCT
Ahy20g0472 20 4805876 4808560 Ahy3g3060 3 127851983 127855712 PCT
Ahy10g0289 10 2571409 2574100 Ahy3g3060 3 127851983 127855712 PCT