Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3030 ATGATCATGGTGGATAATAGCACAGATTCATCATCAGGAGCGGGTGATCAGCATCATCACCCTCAGCTTCCTCCAGGCTTTCGATTCCACCCCACAGACGAAGAACTCGTCGTTCACTACCTTAAAAAGAAAGCTTCTTCTTCACCACTCCCTGTCGCCATCATCGCCGACGTTGATCTCTATAAGTTCGATCCATGGGAGCTCCCAAGTAAGGCAGCGTTTGGGGATCAAGAGTGGTACTTTTTCAGTCCTCGGGATAGGAAGTACCCGAATGGAGCTCGGCCAAACAGGGCGGCTACTTCTGGGTATTGGAAAGCCACCGGGACGGATAAGCCTATTCTCTCTTCTGATGGGAACAAGCAGAAAGTTGGAGTCAAGAAAGCGCTTGTTTTTTATGGTGGCAAGCCCCCCAAAGGTGTCAAAACCAATTGGATTATGCATGAGTATAGGCTCACCGATAACAATAACAATGCTTCTTCTTCTATTTCATCTAAGCCTCCTTCTATCCCTCTTGATCCACTCAAGAAGACTTCTCTCAGGCTTGATGATTGGGTTTTGTGCCGAATATACAAGAAGAGCAACAGCAGTAGTAGCAGCCTTCCAATTCCAAGGCCAGCGTTTTTAATGGATGAAGAGAAGGATCTAATTTCCATGGAGAACAGCATGGTGCCAACTATGTCAATGTCAAAACCAAGAAGCACTTCAACAACAGGTTGTTATGGACCCATGGCACTTGAAAACGATGACAACTTCTTCGATGGTATATTGGCAGCATCAACCGATCATCACACCATGCAAAATGGGTCTCCAGGGTCCTCATCTTCAAGCAAGAGATTCCATGGTGATCTTAATAATGGAGACAACACCTCCTTCGTTTCTCTTCTTAACCAGCTTCCTCACAACACACCGTTTCACCCAAACTCCATTCTTGGCTCCGTGGGAGACGCTGTCTTGAGGCAACAATTTCAACTTCCAGGCTTAAATTGGAACTAA 993 0.4612 MIMVDNSTDSSSGAGDQHHHPQLPPGFRFHPTDEELVVHYLKKKASSSPLPVAIIADVDLYKFDPWELPSKAAFGDQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILSSDGNKQKVGVKKALVFYGGKPPKGVKTNWIMHEYRLTDNNNNASSSISSKPPSIPLDPLKKTSLRLDDWVLCRIYKKSNSSSSSLPIPRPAFLMDEEKDLISMENSMVPTMSMSKPRSTSTTGCYGPMALENDDNFFDGILAASTDHHTMQNGSPGSSSSSKRFHGDLNNGDNTSFVSLLNQLPHNTPFHPNSILGSVGDAVLRQQFQLPGLNWN* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3030 330 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 6 276 - -
Ahy3g3030 330 MobiDBLite consensus disorder prediction 261 282 - -
Ahy3g3030 330 Pfam No apical meristem (NAM) protein 24 151 IPR003441 GO:0003677|GO:0006355
Ahy3g3030 330 SUPERFAMILY NAC domain 19 192 IPR036093 GO:0003677|GO:0006355
Ahy3g3030 330 MobiDBLite consensus disorder prediction 1 17 - -
Ahy3g3030 330 ProSiteProfiles NAC domain profile. 23 192 IPR003441 GO:0003677|GO:0006355
Ahy3g3030 330 PANTHER NAC TRANSCRIPTION FACTOR 56 6 276 - -
Ahy3g3030 330 MobiDBLite consensus disorder prediction 1 28 - -
Ahy3g3030 330 Gene3D NAC domain 32 197 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3030 Ahy-Chr3 127244135 127245722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3030 4 330 NAC Transcription Factor Family AT1G61110 56.977 2.39e-115 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ahy3g3030 NAM 2.50E-40 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3292 13 129792073 129793948 Ahy3g3030 3 127244135 127245722 hybridization
Ahy3g3030 3 127244135 127245722 Ahy20g0495 20 5058449 5060346 PCT
Ahy3g3030 3 127244135 127245722 Ahy10g0311 10 2874771 2876506 PCT
Ahy20g0495 20 5058449 5060346 Ahy3g3030 3 127244135 127245722 PCT
Ahy10g0311 10 2874771 2876506 Ahy3g3030 3 127244135 127245722 PCT