Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3029 ATGGATAATGTTGTTACATTATTGTTAAAGTTAAAGCTGAGAAGCTTGTATAGTATAATGTTGTTACTTTATTATGTGTTGTGCTTAAGGGGTGTTATTGTGTCCTCTAGACCTCATGAGAATGAGAGAAAAGTAACAACGATTATGAATAACAATAATAATAATAATGGTGATGTTGTGAGAGGCTTACCTGGCCAGCCTGCTGTGGATTTTGAGCACTATGCTGGCTATGTTACTGTGAATGAAACCAATGGAAGAGCACTCTTTTACTGGTTCTTTGAGGCCATTACCAACCCAGATGATAAGCCTTTGGTCCTATGGCTTAATGGAGGACCTGGATGTTCTTCTGTGGGATATGGAGCAACACAAGAGATTGGTCCATTTTTAGTGGACTCTGATGGGAAGGGACTCAAATTTAATAACTTGTCTTGGAACCAAGAAGCCAACATGTTATTCCTGGAATCTCCTGTTGGAGTTGGCTTTTCCTACTCAAACACAACTAGTGATTATCAACAATTGGGTGATCAAATGACAGCTAATGATGCTTACACTTTTCTCCATAACTGGTTTCTCAAGTTCCCATCATATAGAACAAGGACTTTTTATATAGCAGGGGAGAGTTATGCAGGCAAGTATGTGCCGGAGCTGGCTGAACTCATCCATGATAGGAACAAGGACCCTTCCCTTCATATTAATCTCAAGGGCATTATGTTAGGAAATCCAGAAACATCTGATGCTGAGGATTGGATAGGGCTAGTAGACTATGCTTGGAGTCATGCAATCATATCGGACGAGACTCACAAAACAATAAAAACAAGTTGTGACTTCAACAGCAGTGATCCATGGCGTAACCAAGATTGCAGTGAAGCAGTAGATGAAGTCCTCAAACAATACAGAGAAATTGATATATACAGCCTCTACACCTCTACTTGCTTTGCCTCTACAGCGCGCTCTTCCATGGCGCGCTCATCATCATCTACAACAATGATGCCTAGAATGATGGGTGGTTATGACCCATGCTTGGATGACTATGCTAGAGCTTATTATAATAGACCAGATGTTCAGAAGGCCCTACATGCTGGTGATGGCCACAATCTCAAGAATTGGAGTATTTGCAACAATGATATATTCAATGGATGGGGAGATTCAAAGGCAAGTGTAGTGCCAATATACAGGAAGCTAATAGCAGGAGGAGGACTTAGGATATGGATTTACAGCGGAGACACAGATGGAAGAGTGCCAGTGCTGTCAACAAGGTATAGCTTAAGTTCTCTTGAATTGAGAGTGAGAAAGGCATGGAGGCCATGGTACCATGAGAATGAGGTGAGTGGGTGGGTAGAAGAATATGAAGGGCTAACATTTGCTACTTTCAGAGGAGCTGGCCACGCTGTTCCATGTTTCAAACCAAGTAGCTCTCTCGCCTTCTTCTCTTCCTTCCTTCGTGGACAATCCCCTCCTTCTACTAAATAA 1470 0.419 MDNVVTLLLKLKLRSLYSIMLLLYYVLCLRGVIVSSRPHENERKVTTIMNNNNNNNGDVVRGLPGQPAVDFEHYAGYVTVNETNGRALFYWFFEAITNPDDKPLVLWLNGGPGCSSVGYGATQEIGPFLVDSDGKGLKFNNLSWNQEANMLFLESPVGVGFSYSNTTSDYQQLGDQMTANDAYTFLHNWFLKFPSYRTRTFYIAGESYAGKYVPELAELIHDRNKDPSLHINLKGIMLGNPETSDAEDWIGLVDYAWSHAIISDETHKTIKTSCDFNSSDPWRNQDCSEAVDEVLKQYREIDIYSLYTSTCFASTARSSMARSSSSTTMMPRMMGGYDPCLDDYARAYYNRPDVQKALHAGDGHNLKNWSICNNDIFNGWGDSKASVVPIYRKLIAGGGLRIWIYSGDTDGRVPVLSTRYSLSSLELRVRKAWRPWYHENEVSGWVEEYEGLTFATFRGAGHAVPCFKPSSSLAFFSSFLRGQSPPSTK* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3029 489 SUPERFAMILY alpha/beta-Hydrolases 56 484 IPR029058 -
Ahy3g3029 489 ProSitePatterns Serine carboxypeptidases, serine active site. 203 210 IPR018202 GO:0004185
Ahy3g3029 489 PANTHER CARBOXYPEPTIDASE 18 485 - -
Ahy3g3029 489 Gene3D alpha/beta hydrolase 55 313 IPR029058 -
Ahy3g3029 489 Gene3D - 340 378 - -
Ahy3g3029 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 153 163 IPR001563 GO:0004185|GO:0006508
Ahy3g3029 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 452 465 IPR001563 GO:0004185|GO:0006508
Ahy3g3029 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 189 214 IPR001563 GO:0004185|GO:0006508
Ahy3g3029 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 140 152 IPR001563 GO:0004185|GO:0006508
Ahy3g3029 489 Gene3D - 387 482 - -
Ahy3g3029 489 Pfam Serine carboxypeptidase 65 482 IPR001563 GO:0004185|GO:0006508
Ahy3g3029 489 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 18 485 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3029 Ahy-Chr3 127236187 127238608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3029 345 483 Calmodulin-binding Proteins AT2G22960 33.571 4.54e-15 71.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3291 13 129783738 129786359 Ahy3g3029 3 127236187 127238608 hybridization
Ahy3g3029 3 127236187 127238608 Ahy20g0498 20 5084519 5088536 PCT
Ahy3g3029 3 127236187 127238608 Ahy10g0313 10 2885192 2889112 PCT
Ahy20g0498 20 5084519 5088536 Ahy3g3029 3 127236187 127238608 PCT
Ahy10g0313 10 2885192 2889112 Ahy3g3029 3 127236187 127238608 PCT