Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3022 ATGCATCCTCCTAGAGAGGCTTGGAGGCTGAAAGTTAGGGTTCTAAGGCTTTGGGTTGTACCCTCTTTTGGGAATCATGATGTTCCTAACTCAATGGAGATGATTCTCCTTGATGAGCATTGTGAAAAAATTCAAGCTACAATTAAGAAATCACTCCTTAATAGGTTTAGGGATCATATAGTTGAAGGTCAAGTTTATAGAATGACATACTTTACTGTTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTTCTTCACCGAACCACTGTTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTATTTCAACATGTTTCCTTTTTCTGAGCTGCTGAACATGACCCAAGATTATGATTTTTTAGTTGATGTCATTGGCCTTTTAACTTTAGTGGAAGAAGAGAAAGAATATGCAAAAGAGGGAAAAATTGTGAAAATGATTGTGCTTGAATTAAGTTCAAAAGATCTTACAATGCGATGTGCATTGTTTGGGGACTATGTTAATCAAGTAAATCATTTTCTTACCTCTGGCTATGTGGAGCAGCCTGTTGTAGTGATTCAACTTGCTAAAGTCAAGTTCTTTAGAGGTCAAGTAGGCCTTCAAAATGTGATGTATGCCACTCAAATATTATTTAATCCTGATCTTCCTGAAGTTGTTGAATTCAGGCAGAGTATGGTTGAGCAAGGTGTCAATGGTACCCAGCCATTGTTTATTGCAAATGAGGGTAAAGTTGTCTCCTTGGAAGATGATTTCATGCGTTTAACTAGAAAATGCACTGTTGAAGAGCTTCAAGATAACAATGAGGAGGGTTCTTTTATCATTTTTGGTACAATCCAAGGTATTGTTGAGGATGGAGATTGGTGGTATTCTGCTTGTGTGTGTGAAAAGGGTATCTATCCTCAAAATGGTGCATATTACTGTGATTTTTGTTTGAAGCACATAACTAATGTGACTCCAAGATTTAAATTTAAAATAACAGTTGAAGATCATAGTGGGGAGGGTATTTTTCTTCTCTTTGATCGTGAGGCATCTTATTTGCTTAAAAAATCATGTGCTGATTTGTTTACCGAGGTTCAAATATATGCAAGTCTTGTATGTGGGGATACTTATCCTTCCTTATTCCAAGGGCTCATTGGAAAGAAGTTACTGCTGAAGGTTGATACCAAAGGTGTGCCACATGATACATTTTATGGCACTTTCCGAGTTAGGAGAATATGTGATGATCCCACCATTATTGCCATGTTTGAGCTTCCCGATTATGATGCTGATGATGAGTCTACTCCAAAAAAGGTTAGATATAAATATAATTATTTTTAG 1338 0.3655 MHPPREAWRLKVRVLRLWVVPSFGNHDVPNSMEMILLDEHCEKIQATIKKSLLNRFRDHIVEGQVYRMTYFTVVSNHGSYRATSHEFKLVFLHRTTVVAVDEDVIPKTYFNMFPFSELLNMTQDYDFLVDVIGLLTLVEEEKEYAKEGKIVKMIVLELSSKDLTMRCALFGDYVNQVNHFLTSGYVEQPVVVIQLAKVKFFRGQVGLQNVMYATQILFNPDLPEVVEFRQSMVEQGVNGTQPLFIANEGKVVSLEDDFMRLTRKCTVEELQDNNEEGSFIIFGTIQGIVEDGDWWYSACVCEKGIYPQNGAYYCDFCLKHITNVTPRFKFKITVEDHSGEGIFLLFDREASYLLKKSCADLFTEVQIYASLVCGDTYPSLFQGLIGKKLLLKVDTKGVPHDTFYGTFRVRRICDDPTIIAMFELPDYDADDESTPKKVRYKYNYF* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3022 445 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 12 362 - -
Ahy3g3022 445 Gene3D - 104 241 IPR012340 -
Ahy3g3022 445 CDD RPA1_DBD_C 267 410 IPR013955 -
Ahy3g3022 445 SUPERFAMILY Nucleic acid-binding proteins 110 232 IPR012340 -
Ahy3g3022 445 Gene3D - 255 417 IPR012340 -
Ahy3g3022 445 CDD RPA1_DBD_B_like 130 232 - -
Ahy3g3022 445 PANTHER REPLICATION FACTOR A 1, RFA1 12 362 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy3g3022 445 SUPERFAMILY Nucleic acid-binding proteins 3 102 IPR012340 -
Ahy3g3022 445 Gene3D - 1 102 IPR012340 -
Ahy3g3022 445 Pfam Replication factor-A C terminal domain 280 363 IPR013955 -
Ahy3g3022 445 CDD RPA1_DBD_A_like 9 97 - -
Ahy3g3022 445 SUPERFAMILY Nucleic acid-binding proteins 265 414 IPR012340 -
Ahy3g3022 445 Pfam Domain of unknown function DUF223 33 125 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3022 Ahy-Chr3 127121018 127123180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3022 1 361 Core DNA Replication Machinery Family AT5G08020 23.545 2.81e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3022 - - adu:107471135 737.258