Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g3001 ATGAATGACCTATTCTCAAGTTCCTTCAAGAAATACACTGATGTGGCGCCGCAGAGCGACTACATGAACGATGTGGAGGCCGGAAAGGAAAGTATCAATCTGGACAAGTTCTTCGAAGATGTGGAGAATGTGAAGGAAGAAATGAGAACCATCGAGAAGCTGTACAGAAAGCTGCAAGAGGCGAATGAAGAGAGCAAGATTGTCCACAATGCTCAGACCATGAAGGATCTTCGCGCGAGAATGGACCAAGACGTCTCTCAGGTGCTGAAACGTGTGAAGATGATCAAGGGTAAGCTGGAGGCTCTAGAAAGGTCCAACGCAGAAAACAGAAAGCTTCCGGGGTGTGGTCCAGGGTCCTCAGCGGACAGGACAAGGTCTTCGGTTGTTAGTGGCTTGGGGAAGAAGTTAAAGGACTTGATGGATGACTTTCAAGGATTGAGGGCCAGGATGCAATCGGAGTACAAGGAGACAGTGGAGCGCAGGTATTTCACAATCACTGGGGAGAAGGCAGATGAAGACACCATTGAGAATTTGATCTCCAGCGGCGAGAGTGAGAGTTTCCTCCAGAAAGCAATTCAAGAACAGGGGAGGGGTCAGATTATGGACACCATTTCTGAAATTCAGGAGAGACATGATGCTGTGAAGGAGATAGAGAAGAACCTTCTTGAGCTTCACCAGGTGTTCCTCGACATGGCAGCTTTGGTGGAGTCTCAGGGCCAACAGCTCAACAACATAGAGAGCCATGTTGCTCATGCCAGTTCCTTCGTTCGCCGCGGCACCGAGCAGCTTCAGGAAGCTAGAGATATTCAAAAGGACTCCAGGAAGTGGTACTGCTATGCCGTCCTCCTCGTCATTGTCCTCATCATTGTCCTCCTCTTCCCTATATTGATAAACATAGCGCCTCACTTGTTTTGA 915 0.4885 MNDLFSSSFKKYTDVAPQSDYMNDVEAGKESINLDKFFEDVENVKEEMRTIEKLYRKLQEANEESKIVHNAQTMKDLRARMDQDVSQVLKRVKMIKGKLEALERSNAENRKLPGCGPGSSADRTRSSVVSGLGKKLKDLMDDFQGLRARMQSEYKETVERRYFTITGEKADEDTIENLISSGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTEQLQEARDIQKDSRKWYCYAVLLVIVLIIVLLFPILINIAPHLF* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g3001 304 CDD SynN 34 191 IPR006011 GO:0016020
Ahy3g3001 304 Gene3D - 34 161 - -
Ahy3g3001 304 SMART tSNARE_6 199 266 IPR000727 -
Ahy3g3001 304 MobiDBLite consensus disorder prediction 107 127 - -
Ahy3g3001 304 Pfam Syntaxin 36 239 IPR006011 GO:0016020
Ahy3g3001 304 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
Ahy3g3001 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Ahy3g3001 304 CDD SNARE_syntaxin1-like 203 265 - -
Ahy3g3001 304 PANTHER SYNTAXIN-124-RELATED 14 296 - -
Ahy3g3001 304 PANTHER SYNTAXIN 14 296 IPR045242 -
Ahy3g3001 304 Gene3D - 194 298 - -
Ahy3g3001 304 Coils Coil 34 71 - -
Ahy3g3001 304 SMART SynN_4 29 155 IPR006011 GO:0016020
Ahy3g3001 304 SUPERFAMILY t-snare proteins 33 259 IPR010989 GO:0016020|GO:0016192
Ahy3g3001 304 Pfam SNARE domain 241 292 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g3001 Ahy-Chr3 126876370 126877830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g3001 1 304 SNARE and Associated Proteins AT1G61290 76.645 3.21e-175 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g3001 K08486 - gmx:100818999 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3269 13 129533805 129535397 Ahy3g3001 3 126876370 126877830 hybridization
Ahy3g3001 3 126876370 126877830 Ahy20g0525 20 5424429 5425522 PCT
Ahy3g3001 3 126876370 126877830 Ahy10g0341 10 3110924 3112113 PCT
Ahy20g0525 20 5424429 5425522 Ahy3g3001 3 126876370 126877830 PCT
Ahy10g0341 10 3110924 3112113 Ahy3g3001 3 126876370 126877830 PCT