Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2943 ATGGATATTTCTTCACTCAGAGGGTTAACTGATCTGGAAATAATGGAAGATCCTACCTATCTTCATCAGTGGCATTTGAGCTCTATTTATGAGCCTACTTTACTTCCGATTGTTGCTGCTTTTGGAGAGACTTTACAGCAACATTCATTCTCTCATCCCAGTTTCAACTCCAAAACTTCCATGGAAACTTCACTTTCTAACATTGACAGACCTACAAAACATCTCAAGAACAATAGCTGGTGTCCAACTAAAACTCCATCCGAGGCACAATTTGCTTCTTGCTCAACTCTTCTTTCATTTGTGGATCCCAATTATATAAACCAGTTGGAAGTGGTGAAGTCTAAGGATGAGATGGTTTGTCCTAAAATGAATGACACAACTCCTAAAGACATGAACTTTCAAGGAACATTAGGAAATCAATATGTGTTCGAAGCTAGTCAGGCGACTAAGCATGTAGGGCCACGTTCTAGACTTTCTCAACCTCAAGACCACATAATAGCCGAAAGGAAGCGTCGAGAGAAGCTCAGTCAACGGTTCATTGCTCTATCTGCCCTTGTTCCTGGACTACAGAAGACAGACAAAGCTTCTGTTCTTGGAGATGCTATCAAATACTTAAAGCAATTGCAAGAGAAGGTGAAGGCTCTTGAGGAAGAACAGAACAAGAGAAAAGCTGTGGAATCTGTAGTATTTGTGAAAAAATCTCAATTATCCAATGATGCAGAAGACGCTTCTTTAGAATATGAGGGTATCTTCCATGAGGCATTACCTGAAATTGAAGCAAGATTCTGTGATAAAAATGTTCTCGTAAGAATCCACTGCGAGAAGAACAGAGGAGTTGTAGAAAAATCAATCAATCAAATTGAGAAACTCCATCTAAAAGTTACCAATAGCAGTGCCATGACATTTGGGAGCTGGGCCTTAGATATAACTATTATTGCTCAGATGGAAAAGGGATTTTGCATGACAGTGAAGGAGCTTGTGAGAAACCTGCGCTCAGCTTTTGCATCTATCATTTGA 1017 0.3982 MDISSLRGLTDLEIMEDPTYLHQWHLSSIYEPTLLPIVAAFGETLQQHSFSHPSFNSKTSMETSLSNIDRPTKHLKNNSWCPTKTPSEAQFASCSTLLSFVDPNYINQLEVVKSKDEMVCPKMNDTTPKDMNFQGTLGNQYVFEASQATKHVGPRSRLSQPQDHIIAERKRREKLSQRFIALSALVPGLQKTDKASVLGDAIKYLKQLQEKVKALEEEQNKRKAVESVVFVKKSQLSNDAEDASLEYEGIFHEALPEIEARFCDKNVLVRIHCEKNRGVVEKSINQIEKLHLKVTNSSAMTFGSWALDITIIAQMEKGFCMTVKELVRNLRSAFASII* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2943 338 Coils Coil 198 228 - -
Ahy3g2943 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 222 IPR036638 GO:0046983
Ahy3g2943 338 Pfam Helix-loop-helix DNA-binding domain 162 209 IPR011598 GO:0046983
Ahy3g2943 338 PANTHER BHLH TRANSCRIPTION FACTOR 2 337 - -
Ahy3g2943 338 CDD bHLH_AtNAI1_like 162 234 - -
Ahy3g2943 338 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 2 337 - -
Ahy3g2943 338 Gene3D - 157 232 IPR036638 GO:0046983
Ahy3g2943 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Ahy3g2943 338 SMART finulus 165 214 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2943 Ahy-Chr3 125864804 125868253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2943 1 338 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.054 4.87e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy3g2943 HLH 3.40E-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2943 - - aprc:113852973 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy3g2943 3 125864804 125868253 Ahy20g0649 20 7061920 7065044 PCT
Ahy3g2943 3 125864804 125868253 Ahy10g0449 10 4398605 4401408 PCT
Ahy20g0649 20 7061920 7065044 Ahy3g2943 3 125864804 125868253 PCT
Ahy10g0449 10 4398605 4401408 Ahy3g2943 3 125864804 125868253 PCT