Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2893 ATGGGGATGCATCACAGGAAGCTTTTTTCAAGGCAGGATGCCTGCAGTGACCAGTGTTACAATGAAGACCCTTCTTGTTTGGGAAGATCGGATTGCAACGACTGCATCAAATGCTCGTCCACCCTGAATCCTCCACCACCACACAGCAACCGTCACATCCCCACCTTCTTGATCATCATAGTTCCCGTCGTATGCGCCGCCCTCTTTGCCCTCTTCTGCTACGTCATCTACGCCAAGTTCTACTCCCCCAGGAGCAGGTCAAGGACCACGTTCTTCTCGTTATCGTTTCCGTTACGGCTACAACAAGGACAGGAACGGAACGGCGACGACTTTCTGGATGACGGAGAAGGCGCCACTACGGTGGACCACCCTATCTGGTACATCCGTACAGAGGGTCTGAACAAAACCATCATCGAGGCCATCACGGTTCTGAAGTACAAGAAAGGCGAAGGGTTGGTTGAAGGAACAGAGTGCTCTGTTTGCTTGAGCGACTTTGAAGAAGACGACACCCTCAGGCTGTTACCCAAATGCAACCACGCTTTCCATCTCCCTTGTATTGACACGTGGCTCGCATCTCACACCAACTGTCCCATGTGTAGGGCTCCCATTGTTACCAACCCCAGAGCTTCTAGGCTTCCCTCCATGGACCACCCTGCTACTCTTGTTGTTGATTCCACTCCTCTCCAGATTCGTGGAGACGCTGCAACAACGGAAGAAAACAGTGGCAGTGAGACTGTGGAGAGGAATGGATCAGAGGAACAAGTTGAAGCTGATGTTGAAGCTGCAACAAGGAACGTGCAGCCAAGGAGATCGGTGTCTTTGGATTCTTCTTCTGCTGCCAAGATCAGCGCTGCTCTTGTTGCTGCTACTACTACTGTTGCATCAGTGCAAGAATCTAAAGAGAATTCAAAGAGGATTACTGCTTCTGCAAAAGGTAGTAGTTCATCATCTTCTTCTTCTTCGAGTGCGCCTAGTTCAATGAAGAGGTCACGCTCCTTCAGTGGGAAACACGTGCTATCCTGGTACGGCCGCAACCACAACCAGAACCAGAAGAAGACGAATCCTCCAGTCAGAAGCTTTTGA 1083 0.506 MGMHHRKLFSRQDACSDQCYNEDPSCLGRSDCNDCIKCSSTLNPPPPHSNRHIPTFLIIIVPVVCAALFALFCYVIYAKFYSPRSRSRTTFFSLSFPLRLQQGQERNGDDFLDDGEGATTVDHPIWYIRTEGLNKTIIEAITVLKYKKGEGLVEGTECSVCLSDFEEDDTLRLLPKCNHAFHLPCIDTWLASHTNCPMCRAPIVTNPRASRLPSMDHPATLVVDSTPLQIRGDAATTEENSGSETVERNGSEEQVEADVEAATRNVQPRRSVSLDSSSAAKISAALVAATTTVASVQESKENSKRITASAKGSSSSSSSSSSAPSSMKRSRSFSGKHVLSWYGRNHNQNQKKTNPPVRSF* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2893 360 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 12 343 IPR044675 -
Ahy3g2893 360 SUPERFAMILY RING/U-box 152 206 - -
Ahy3g2893 360 ProSiteProfiles Zinc finger RING-type profile. 158 200 IPR001841 -
Ahy3g2893 360 MobiDBLite consensus disorder prediction 296 360 - -
Ahy3g2893 360 MobiDBLite consensus disorder prediction 296 333 - -
Ahy3g2893 360 MobiDBLite consensus disorder prediction 341 360 - -
Ahy3g2893 360 PANTHER RING-H2 FINGER PROTEIN ATL54 12 343 - -
Ahy3g2893 360 SMART ring_2 158 199 IPR001841 -
Ahy3g2893 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 208 IPR013083 -
Ahy3g2893 360 CDD RING-H2_PA-TM-RING 157 200 - -
Ahy3g2893 360 MobiDBLite consensus disorder prediction 234 278 - -
Ahy3g2893 360 Pfam Ring finger domain 157 200 IPR001841 -
Ahy3g2893 360 MobiDBLite consensus disorder prediction 245 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2893 Ahy-Chr3 125188110 125189529 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2893 104 336 C3H Transcription Factor Family AT4G33565 41.949 2.77e-46 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2893 - - aip:107631077 660.218