Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2887 ATGACCTCTGCTAATGACATCACTGATAATGAAGCTGATGGGAAGCAACAGTCTGAATCAGAGATGCAGTCTTCCTCTGCAAATGGAACTTCTGATCCAGACACGGGTTCCCAGAATATTCAGTTTGAAAAACCTGCACAGCTTGGAGATGTTCTGGCTATGTTAATGGGAATTCAGCAAGCTGGTGTTCCTCTGCCAAGTGATGCTTTTGAGGAGCCTGTGTTTGTAAATGCGAAACAATATCATGGTATATTAAGACGAAGGCAATCCCGTGCCAAAGCTGAATCAGAGCGTAAAGCTATTAGGAATAGGAAGCCATACTTGCATGAATCTCGGCATTTGCATGCGCTGAAAAGAGCAAGAGGATGTGGAGGCCGATTTCTAAATGCAAAGGAAAATGAGAACGGACATAATGATGCGGCATCAACTGACAAATCACAGTGCAATATCAACCCCAATTCTGATAAAAGTGATATCACTTCATCTGATAGGACAGTCTAA 501 0.4271 MTSANDITDNEADGKQQSESEMQSSSANGTSDPDTGSQNIQFEKPAQLGDVLAMLMGIQQAGVPLPSDAFEEPVFVNAKQYHGILRRRQSRAKAESERKAIRNRKPYLHESRHLHALKRARGCGGRFLNAKENENGHNDAASTDKSQCNINPNSDKSDITSSDRTV* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2887 166 MobiDBLite consensus disorder prediction 88 104 - -
Ahy3g2887 166 MobiDBLite consensus disorder prediction 128 166 - -
Ahy3g2887 166 ProSiteProfiles NF-YA/HAP2 family profile. 70 130 IPR001289 GO:0003700|GO:0006355
Ahy3g2887 166 MobiDBLite consensus disorder prediction 87 107 - -
Ahy3g2887 166 PRINTS CCAAT-binding transcription factor subunit B signature 73 95 IPR001289 GO:0003700|GO:0006355
Ahy3g2887 166 PRINTS CCAAT-binding transcription factor subunit B signature 104 127 IPR001289 GO:0003700|GO:0006355
Ahy3g2887 166 Gene3D - 70 132 - -
Ahy3g2887 166 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 51 152 - -
Ahy3g2887 166 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 72 127 IPR001289 GO:0003700|GO:0006355
Ahy3g2887 166 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 51 152 IPR001289 GO:0003700|GO:0006355
Ahy3g2887 166 MobiDBLite consensus disorder prediction 140 160 - -
Ahy3g2887 166 ProSitePatterns NF-YA/HAP2 subunit signature. 75 95 IPR018362 GO:0003677|GO:0016602
Ahy3g2887 166 MobiDBLite consensus disorder prediction 1 44 - -
Ahy3g2887 166 SMART cbf3 69 130 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2887 Ahy-Chr3 125125307 125129517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2887 33 146 CCAAT-HAP2 Transcription Factor Family AT1G30500 64.035 3.26e-50 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Ahy3g2887 CBFB_NFYA 1.50E-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2887 K08064 - gmx:100499754 228.409