Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2871 ATGGCTTCAGTGTTGGGCAGATTTGAAGCTGCATTAGAAGCAGTTCAAGAAGCAAGTAGGCTAGACTCAAATAACAGGGAGGTTAGCAAAGTGATGAGGAAGGCGAAAGGCATGGCAGCTGCAAGATCAAATGGCAACAACCTTTTCAAGGAATCGAAATTCTCCGAGGCTTGTGCTGCCTATGAAGAGGGTCTTGCCCATGATCCTTATAACTCGGTTTTGCTATGCAACCGAGCTGCTTGTAGAGCAAACTTAGCTCAATACGACAAAGCTGTGGAAGATTGTACGGCTGCTCTTAGTTTGCGCCCATCTTACACCAAGGCCAGGTTGAGAAGAGCTAATTGTAATGCAAAGGTATTCAATTTCTTAAACTTCAATTTCTATGTTTAA 390 0.4359 MASVLGRFEAALEAVQEASRLDSNNREVSKVMRKAKGMAAARSNGNNLFKESKFSEACAAYEEGLAHDPYNSVLLCNRAACRANLAQYDKAVEDCTAALSLRPSYTKARLRRANCNAKVFNFLNFNFYV* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2871 129 Pfam Tetratricopeptide repeat 74 105 IPR001440 GO:0005515
Ahy3g2871 129 PANTHER OS01G0616333 PROTEIN 4 119 - -
Ahy3g2871 129 SMART tpr_5 72 105 IPR019734 GO:0005515
Ahy3g2871 129 SMART tpr_5 38 71 IPR019734 GO:0005515
Ahy3g2871 129 Gene3D Tetratricopeptide repeat domain 2 122 IPR011990 GO:0005515
Ahy3g2871 129 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 4 119 IPR044534 -
Ahy3g2871 129 SUPERFAMILY TPR-like 39 119 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2871 Ahy-Chr3 124544788 124546235 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2871 42 109 U-box Gene Family AT3G07370 35.294 6.18e-07 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2871 - - ahf:112791270 257.684