Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2870 ATGGGAGATATATTGCCGCATAAATATGGTTGCTGCTTAGTATTCTGGAGACGCGGAACAACCTCCGAGACTTCTGCTCCCATTGCCAAAATCAATGACAAGAATTTTGTGAAGGAACCGAACCCAAAATACATGAAAAGGCATGGAGGTGGCTCCAAAGATGCATCTTCGGTGCCAACAACTACGTCCAAAGCCCAAGATTATTCATCACGTTCTAACTCCTCCAAGCCTCATCAATACAAGCCAACTCTTGCTGTGACCGAAAATAAAGTACGAGGCACATCAAGAGTTTCACCTGCTGAGGGCTATGTCACTCAAGGAAGGAGGGTGCCCCAAGAAGCCGTTGGCATATCCGGCGAGCTCGAAAGAATGATCATGGATCACCACAAGTCAAATGGAAGCAGTACCCTTGTTAGAGCTTCATCAAGCAATGTCATGCTGGCTGGTGATTTAGGTAACCTGAGGCAACAGAGTACCAATTCAAGCAATAGTGCTGTGGGCAAACATATTAGGCAAGAAAACCCAGACCCGGTTGCTTATAACGGAAAAAACACAAATCCTACGGAGCTAAATGTGGCCAGAATAGAAAAGAAAGACTCTGCTTCTTTTTGCAGAGCACTATCTATTAGAATGGATCCAGAGCAGTTAAAGATAATGGGAAATGAAGATTACAAGAATGGGAGGTTTGAAGAGGCTTTAGCTTTGTATGATGCTGCGATTGCGCTTGATCCGAATAAGGCATCGTATAGGAGCAACAGAAGTGCAGCATTAACTGCACGTGGTAGGCTCTTGGAAGCTGTGTTTGAGTGTAGAGAAGCCATCCAAATAGAGCCTCATTACCATAGAGCTCATCATCGATTGGGAAACTTGTACACAAGATTAGGGGAAACAGATAAGGCCCTTTATCATTATAAACATGCAGGACCTGAGGCTAATCCAGAAGAGATTGCAAGAGCAAAGAATCTTCAGCTCCAGCTAAACAAGTGCACCGAGGCTCGCAGGTTAGGAGATTGGAACAACCTCATCAAGGAGACTAATAACGCTATATCATGCGGTGCAGATTCCGCTCCACAGATATTTGCATTGCAAGCAGAAGCATTTTTAAAGCTCCGAAGGCATCAAGATGCAGACGAAGCAATGTCAAAGGGTCCAAAGTTTAAAGTTGAGGATTGTACCAAGTTCTTTGGAGCCATAAGTAATGCAAATTTGTTGGTGACTCGGGCTCAAGTTGATTTGGTTGCTGGCAGGTTAGTGTCTTAA 1260 0.4429 MGDILPHKYGCCLVFWRRGTTSETSAPIAKINDKNFVKEPNPKYMKRHGGGSKDASSVPTTTSKAQDYSSRSNSSKPHQYKPTLAVTENKVRGTSRVSPAEGYVTQGRRVPQEAVGISGELERMIMDHHKSNGSSTLVRASSSNVMLAGDLGNLRQQSTNSSNSAVGKHIRQENPDPVAYNGKNTNPTELNVARIEKKDSASFCRALSIRMDPEQLKIMGNEDYKNGRFEEALALYDAAIALDPNKASYRSNRSAALTARGRLLEAVFECREAIQIEPHYHRAHHRLGNLYTRLGETDKALYHYKHAGPEANPEEIARAKNLQLQLNKCTEARRLGDWNNLIKETNNAISCGADSAPQIFALQAEAFLKLRRHQDADEAMSKGPKFKVEDCTKFFGAISNANLLVTRAQVDLVAGRLVS* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2870 419 Pfam TPR repeat 220 253 - -
Ahy3g2870 419 MobiDBLite consensus disorder prediction 38 101 - -
Ahy3g2870 419 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 14 417 IPR044534 -
Ahy3g2870 419 SUPERFAMILY TPR-like 213 383 IPR011990 GO:0005515
Ahy3g2870 419 SMART tpr_5 213 246 IPR019734 GO:0005515
Ahy3g2870 419 SMART tpr_5 247 280 IPR019734 GO:0005515
Ahy3g2870 419 SMART tpr_5 281 315 IPR019734 GO:0005515
Ahy3g2870 419 MobiDBLite consensus disorder prediction 154 185 - -
Ahy3g2870 419 MobiDBLite consensus disorder prediction 154 169 - -
Ahy3g2870 419 PANTHER OS01G0616333 PROTEIN 14 417 - -
Ahy3g2870 419 MobiDBLite consensus disorder prediction 54 94 - -
Ahy3g2870 419 ProSiteProfiles TPR repeat profile. 213 246 IPR019734 GO:0005515
Ahy3g2870 419 Gene3D Tetratricopeptide repeat domain 211 409 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2870 Ahy-Chr3 124544788 124548001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2870 214 348 U-box Gene Family AT3G07370 31.973 2.92e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2870 - - adu:107480447 825.854