Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2844 ATGACAGGAATATCAGAAGTGTTGTATCAGCTGTACGCTAAAGCAATAGTGCTATTAGCATACATGCTCATAGAACTTGTCCTTCTTATTCAGTATCTCAAATCAGACAAACGCAGCAGCACCACAATCACCACCACCCAGTATCTCAGATTCGTTGAAGAGAAGAACCCCACAATTCTCTACACCAAGAGCATGATGCAGCAACTGGATCCTGTTGAATGCAGAGTGTGCTTGAATGAGTTCCATGAAGGTGATCAATTGAGGAACCTCAAGTGTCACCACGCTTTTCATAGGGATTGTTTGGACAAGTGGTTGCAACAATCTTTTGCTACTTGCCCTCTTTGCAGGATCAAGCTGTTACCTGATTATGTTGTTGCAAAGTATCAGAATAATCACCATAATCATTATCAGCGCAATAATACTGAGGTAGAGTATTATGAAGGCAATGATGATCAGCTTATTCTTTTTTTATCTTCACTGAGGGGTAGTAATCGTACTTTGCATAGATATCTCTGA 516 0.4031 MTGISEVLYQLYAKAIVLLAYMLIELVLLIQYLKSDKRSSTTITTTQYLRFVEEKNPTILYTKSMMQQLDPVECRVCLNEFHEGDQLRNLKCHHAFHRDCLDKWLQQSFATCPLCRIKLLPDYVVAKYQNNHHNHYQRNNTEVEYYEGNDDQLILFLSSLRGSNRTLHRYL* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2844 171 PANTHER - 1 164 - -
Ahy3g2844 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 121 IPR013083 -
Ahy3g2844 171 SUPERFAMILY RING/U-box 64 124 - -
Ahy3g2844 171 SMART ring_2 74 115 IPR001841 -
Ahy3g2844 171 ProSiteProfiles Zinc finger RING-type profile. 74 116 IPR001841 -
Ahy3g2844 171 Pfam Ring finger domain 73 116 IPR001841 -
Ahy3g2844 171 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 164 - -
Ahy3g2844 171 CDD mRING-H2-C3H2C2D_ZSWM2 73 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2844 Ahy-Chr3 123840868 123841383 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2844 16 116 C3H Transcription Factor Family AT5G45290 42.453 9.86e-19 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2844 K16282 - gmx:102669811 197.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3172 13 127202836 127203351 Ahy3g2844 3 123840868 123841383 hybridization
Ahy3g2844 3 123840868 123841383 Ahy20g1235 20 23579068 23580084 PCT
Ahy3g2844 3 123840868 123841383 Ahy10g0909 10 15442764 15443728 PCT