Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2842 ATGACGGATCAAATAGTTTCTTCTCCTCTAATTCCTCCTCCATCTATCACCCACTCTTCCGCCATCGACCTTGAAGCCGGTTCCTCCGAACAAATCCAATGCCGGATTTGTCTCGAAACAGATGGCAGAGATTTCATTGCTCCTTGCAAATGCAAAGGTACATCAAAATATGTACATCGAGAGTGTTTGGATCACTGGCGTGCGGTTAAGGAAGGGTTTGCATTTGCTCACTGTACTACTTGCAAGGCACCTTATCATTTGCGTGTTCATGGTGCTGCAGATAGGAAATGGCGTACCTTGAAATTTCGGTTTTTTGTCACCAGAGACATTTTGTTTATATTTCTGGCAGTTCAGCTTGTCATTGCTTCATTGGCATATTTGGTTTATCTAATAGATGGTTACCAGCAGTACTGGCTTCATCTTGTTTGGGGTTTTGATAGTGAGCCAAGCTTTTACTACATATGTGGAGCCCTCTTGTTTTTTGTGTTGCTTGGCCTATCAGGATGCTTCATTACTTGTTATGATCGAAGAGTTCGCAATGATTTGGCACAGCCTTGTCGAGAAATCTGTTTTTGTTGCTGTCATCCTGGAGTCTGTGCAGACTGCCATTTGCCGGGGACACTTTGCATGTGGACTGATTGCACTGCATGCTTTGAGAGTTGTGGAACGATGGCAACTGAATGTGGAAGTTGCATGGGAGGTGCTGGCGAAGCAGGGCTGCCATTACTATTCATAATGGCTTTGATTTTTCTCGGACTCTTTACTCTAATTGGGATATTTTACAGTGTATTAGTGGCTACCATGATAGGACAACGAATATGGCAGCGTCATTATCATATACTTGCAAAAAGGATGCTAACAAAGGAGTATGTCGTTGAGGATATCGACGGAGAGGTGTCACGGTCTGACTGGTCTCCTCCAACTCTCCCACCGGAACATGTTCAACAGCTGAAATCACTGGGCCTTTTATGA 972 0.4414 MTDQIVSSPLIPPPSITHSSAIDLEAGSSEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHGAADRKWRTLKFRFFVTRDILFIFLAVQLVIASLAYLVYLIDGYQQYWLHLVWGFDSEPSFYYICGALLFFVLLGLSGCFITCYDRRVRNDLAQPCREICFCCCHPGVCADCHLPGTLCMWTDCTACFESCGTMATECGSCMGGAGEAGLPLLFIMALIFLGLFTLIGIFYSVLVATMIGQRIWQRHYHILAKRMLTKEYVVEDIDGEVSRSDWSPPTLPPEHVQQLKSLGLL* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2842 323 PANTHER - 5 323 - -
Ahy3g2842 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 5 323 - -
Ahy3g2842 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 94 IPR013083 -
Ahy3g2842 323 SUPERFAMILY RING/U-box 28 86 - -
Ahy3g2842 323 SMART ringv_2 33 82 IPR011016 GO:0008270
Ahy3g2842 323 CDD RING_CH-C4HC3_MARCH 34 82 - -
Ahy3g2842 323 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Ahy3g2842 323 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2842 Ahy-Chr3 123748627 123752583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2842 1 323 C3H Transcription Factor Family AT2G22120 80.247 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2842 - - gmx:100791777 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3169 13 127067297 127071344 Ahy3g2842 3 123748627 123752583 hybridization
Ahy3g2842 3 123748627 123752583 Ahy20g1237 20 23626096 23630302 PCT
Ahy3g2842 3 123748627 123752583 Ahy10g0911 10 15573708 15577835 PCT