Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2788 ATGCAACCAATGATTATGTTTCCCGGTCTGAATAAAGAGGAGGAGATGTATACTATGGTTGAGGCTTTGACTCATGTTGTTCGTGGAGAAATACCTCAAGAAGCTGCTGATGTTGCTGTGACATCTAACATGGCTTCTGTGTCTGCAACACCATCTACGTCCTCCTCATCTTATGGACTCAATTCTAATCTCAAAAGAAGTAGGGAAGATGATATACCCTTTCTTGCTTCATCCTCTGCTGCTATTCCACCAATTTCAGAGCTTGCAATCAACGGGAAAACAAGAAGCGAAAGAAGCGAAATGGGAGATGATGCAATAGTGTACGAATACAGAACAGATCTAAAGAAGAATGATGAGGAGAAGAGGAAGAACAATGAAGGGAAGAGAAAATACAGAGGAGTGAGGCAGAGGCCATGGGGGAAGTGGGCTGCAGAGATCCGAGATCCATTCAAAGCAGCAAGAGTGTGGTTAGGAACCTTCAACACTGCAGAGGCTGCTGCCATTGCTTACGACCAAGCCTCTCTCCGCTTCAGAGGCAACAAAGCCAAACTCAACTTCCCTGAAAATGTTAGGGTGAAGCAACCACCACCACCAACCGCTTTCACCATTTCTCATACTGCTTCTTCTTCTTCTTCTGGTGCATATGTGCCCCTTCCACCTTCCACTGTGGAGGCTTCACCACCCAAGTTTTATGACTTCTCCTCAGAGTTTTCAGACTTCCCCATCAGTTTATATGATCAGATGTTTGTGTCGTCTGCAATGGCTTCTCATATTCAAGCTTCTTCGGCTTCATCGCCAGCGGCATCGAATTCTTCCTCTTCTTCAGTGTTTGCTTATTCTGTAACTTCTGCTCCACAGGCAACTCCAATTCCTTCTGTTTATTCTGCTAAGCTGCCGCCATGGTCTTCTTCTGAGAGAGGGTCCAAGGGTTGA 933 0.4566 MQPMIMFPGLNKEEEMYTMVEALTHVVRGEIPQEAADVAVTSNMASVSATPSTSSSSYGLNSNLKRSREDDIPFLASSSAAIPPISELAINGKTRSERSEMGDDAIVYEYRTDLKKNDEEKRKNNEGKRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFNTAEAAAIAYDQASLRFRGNKAKLNFPENVRVKQPPPPTAFTISHTASSSSSGAYVPLPPSTVEASPPKFYDFSSEFSDFPISLYDQMFVSSAMASHIQASSASSPAASNSSSSSVFAYSVTSAPQATPIPSVYSAKLPPWSSSERGSKG* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2788 310 Pfam AP2 domain 130 179 IPR001471 GO:0003700|GO:0006355
Ahy3g2788 310 CDD AP2 130 189 IPR001471 GO:0003700|GO:0006355
Ahy3g2788 310 PANTHER DNA-BINDING DOMAIN PROTEIN 37 306 - -
Ahy3g2788 310 MobiDBLite consensus disorder prediction 289 310 - -
Ahy3g2788 310 PRINTS Ethylene responsive element binding protein signature 153 169 IPR001471 GO:0003700|GO:0006355
Ahy3g2788 310 PRINTS Ethylene responsive element binding protein signature 131 142 IPR001471 GO:0003700|GO:0006355
Ahy3g2788 310 Gene3D AP2/ERF domain 129 189 IPR036955 GO:0003700|GO:0006355
Ahy3g2788 310 SUPERFAMILY DNA-binding domain 130 188 IPR016177 GO:0003677
Ahy3g2788 310 SMART rav1_2 130 193 IPR001471 GO:0003700|GO:0006355
Ahy3g2788 310 ProSiteProfiles AP2/ERF domain profile. 130 187 IPR001471 GO:0003700|GO:0006355
Ahy3g2788 310 PANTHER DNA-BINDING DOMAIN 37 306 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2788 Ahy-Chr3 122106977 122109101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2788 121 192 AP2-EREBP Transcription Factor Family AT2G33710 75.000 2.89e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy3g2788 AP2 3.40E-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2788 - - adu:107480341 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3113 13 125239763 125241956 Ahy3g2788 3 122106977 122109101 hybridization