Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2785 ATGGACTTCGACGAGTACGAATACTTGGAGAAGACAGTGGAGGACCACGACGACAAAGACTCCTCTAAGCTCAAGAAGAAGGACTCCACCGACAGAACAGATAGGTCTTACCGCAAGCGTGACGTTGACGACGATCTCGACGCTGCCGACGACAAGCGCACCAAGCGCTCCAGGCACGACGACGACGACACCACTGGCTCCAAGAGGGACCGTGACCGTGACCGCGAACGGTCCAGCCGTGACAGGGAGCGCCACCGCAGTGAGAGGGAGAAGGATAGGGATAGGGATAGGGACGGGGAGAGGAGCAGCAGAGAAAAAGAGAAGGAGAGGGATCGGGATAAGGACAGAGAGAGGAGGGACAGAGACAGGGATAGAGATAGGGACAAGGAGAGGGAGAGGAGAGATAGGGAGAGAGAAAAGGAACGCGAGAGAAGGGAGAGGGAGAGGGAGAAGGAAAAGGAGAAAGAGAGAGAGGAGAGAGAGAGATCCAGGAGGAGCAGGAGTCGTTCCGAGAGAGACAGAGACAGAGAAAGAGAACCAGATTTCGAATCTCGCGATGGCCGGAGGTTTAGGGATAAAAAAGAGGCTGCGGAGCCCGAGGCAGACCCAGAAAGGGATCAGAGAACTGTTTTTGCCTATCAGATGCCCTTAAAAGCAACAGAGAGAGATGTATATGAATTCTTCTCAAAAGCTGGCAAGGTTAGAGATGTTCGTCTGATCATGGATAGAAACTCAAGACGTTCTAAAGGAGTTGGGTACATTGAATTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTCTTTCTGGCCAGCTTCTTCTTGGTCAACCTGTAATGGTGAAACCTTCTGAGGCTGAAAAGAACCTTGTTCAATCTACTGCTTCCACTGGAGCTGCTGGCGTAGCAGGACCATATGGTGCCATGGACAGAAAGCTGTATGTGGGCAATCTTCATTTCAACATGACTGAGAGTCAGCTGCGAGAGATTTTTGAGCCATTTGGGCCGGTGGAGGTTGTACAACTGCCTCTTGACTTGGAGACAGGACACTGCAAAGGTTTTGGGTTTGTTCAATTTGCCCATCTTGAACATGCCAAGGCAGCACAGAATTTAAACGGAAAATTGGAGATTGCTGGCAGGACTATCAAGGTTTCATCTGTAACTGATCATGTTGGGAGCCAAGATACAACTGCAAAATCTGCAGATCTTGATGATGATGAAGGTGGATTGGCTTTAAATGCACAATCAAGAGCATTGCTTATGCAGAAGTTGGCAGACCGCCATGGCCTTCCTGGAAGCAATGGGGTGCCTGCTGTGAATGGGGCTGTTACTATTCAGCCAACCATGGGTTTGCCTATTGGTAATCCAGGTATAATACCTGCACCTGCTCTCCCAACTCAAATTTTGCCTGCTCCAGTGGCAGAACCTGTAGGGATCCCCAGTGAGTGTTTGCTGTTGAAGAATATGTTTGACCCTAGCACCGAGACTGAGCCAGATTTTGATATAGACATTAAAGAGGATGTAGAAGAAGAGTGTTCTAAATATGGCCGGGTGAAGCATATTTATGTTGACAAAAGAAGTGCGGGTTTTGTATATTTGCGGTTTGAAACGGTGGAAGCAGCAAGCGCTGCACAACGGGCAATGCACTTGAGATGGTTTGCACGCAGATTGATTTCAGCTGTGTTCATGCAACCTCAGGTCTACGAAGCTAAGTTTAAAGGAGAAGACTGA 1728 0.489 MDFDEYEYLEKTVEDHDDKDSSKLKKKDSTDRTDRSYRKRDVDDDLDAADDKRTKRSRHDDDDTTGSKRDRDRDRERSSRDRERHRSEREKDRDRDRDGERSSREKEKERDRDKDRERRDRDRDRDRDKERERRDREREKERERREREREKEKEKEREERERSRRSRSRSERDRDREREPDFESRDGRRFRDKKEAAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSTASTGAAGVAGPYGAMDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFAHLEHAKAAQNLNGKLEIAGRTIKVSSVTDHVGSQDTTAKSADLDDDEGGLALNAQSRALLMQKLADRHGLPGSNGVPAVNGAVTIQPTMGLPIGNPGIIPAPALPTQILPAPVAEPVGIPSECLLLKNMFDPSTETEPDFDIDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLRFETVEAASAAQRAMHLRWFARRLISAVFMQPQVYEAKFKGED* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2785 575 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 403 499 IPR029123 -
Ahy3g2785 575 Coils Coil 126 173 - -
Ahy3g2785 575 Gene3D - 476 574 IPR012677 -
Ahy3g2785 575 MobiDBLite consensus disorder prediction 1 208 - -
Ahy3g2785 575 SUPERFAMILY RNA-binding domain, RBD 309 387 IPR035979 GO:0003676
Ahy3g2785 575 CDD RRM1_RBM39_like 209 281 - -
Ahy3g2785 575 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 504 556 IPR000504 GO:0003723
Ahy3g2785 575 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 277 IPR000504 GO:0003723
Ahy3g2785 575 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 382 IPR000504 GO:0003723
Ahy3g2785 575 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Ahy3g2785 575 TIGRFAM SF-CC1: splicing factor, CC1-like family 92 571 IPR006509 GO:0003723|GO:0005634|GO:0006397
Ahy3g2785 575 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 388 IPR000504 GO:0003723
Ahy3g2785 575 SUPERFAMILY RNA-binding domain, RBD 476 563 IPR035979 GO:0003676
Ahy3g2785 575 PANTHER CC1-LIKE SPLICING FACTOR 1 574 - -
Ahy3g2785 575 CDD RRM2_RBM23_RBM39 312 384 - -
Ahy3g2785 575 SMART rrm1_1 311 384 IPR000504 GO:0003723
Ahy3g2785 575 SMART rrm1_1 482 559 IPR000504 GO:0003723
Ahy3g2785 575 SMART rrm1_1 209 281 IPR000504 GO:0003723
Ahy3g2785 575 CDD RRM3_RBM39_like 480 562 - -
Ahy3g2785 575 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 574 - -
Ahy3g2785 575 SUPERFAMILY RNA-binding domain, RBD 201 290 IPR035979 GO:0003676
Ahy3g2785 575 MobiDBLite consensus disorder prediction 9 207 - -
Ahy3g2785 575 Gene3D - 306 402 IPR012677 -
Ahy3g2785 575 Gene3D - 201 294 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2785 Ahy-Chr3 121997865 122003413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2785 290 383 Eukaryotic Initiation Factors Gene Family AT4G34110 36.842 5.01e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2785 K13091 - gmx:100802446 663.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3111 13 125165065 125170620 Ahy3g2785 3 121997865 122003413 hybridization
Ahy3g2785 3 121997865 122003413 Ahy10g1520 10 88019355 88025105 PCT
Ahy10g1520 10 88019355 88025105 Ahy3g2785 3 121997865 122003413 PCT