Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2779 ATGGATTTGGATGATTTCCGATCCATACTGGACACCGCCGGCGTCGACGTTTGGGCTTTCTTTGACGCTGCAATCGACGTCGCTTCCACCGATAACGCCGACGAATTGAAGCGCCGCCGGGACGGAATCGTGGAGCGCCTTTACGCCGCCACTGCCACGCCTCCCCGGTGTCTGAATTGCGAAGCAAATGCCGTCGAAGCACACAATCAGCAAAACAAATCGTCAGAGGACGAGGATTTGGATCCTTTTGGAGGCTTATTCGATGACGAGCAGAAGAAGATTCTAGAAATTAAGCACCAACTTGAAGATCCTCACCAGTCGGAAGATTCGTTGGCGGAGTTGCTACAGAATCTGGCGGACATGGATATTACATTCCAGGCTTTAGAGGAAACTGACATTGGGAGGAACGTGAATCGGTTAAGGAAGCATTCCTCCAGTGAAGTTCGCAGATTGGTGAAGCTTCTTGTCAGGAAGTGGAAGGAAATTGTAGATGAATGGGTGAAGCTGAAGGCACCTGGAGAACCTGCTACTGCTAGCACTGTCATTGGTGATGATGAAGATTCGCCTCAGCAGAGGAATCAACTAAATGGGCATCATCAGATTCCTGATTTTGCATGCTCGCCAAATCCAGAGAATGGCAATTTTGAGTCTTCCGAACCAAAACCAATTCCTCGCAAAGAAGCTCTGCCAAAACCAGCTCAAAAATCACCATCGCCATTACCATCGGTTCCCACTCCTCCTCCTCCTCAAAACAGACAAAAAGAGAGCAATTTTGACGCGGAGAGACTTGCTTCAGCAAGAAAACGACTTCAAGAGAACTACAAAGAGGCTGCAAATGCGAAAAAGCAAAGAACGATACAGGTGATGGACCTGCATGAGTTGCCAAAACCAAAAGCCAAGAATGTTTTCTTTGGAAAGAACAAAGGCGGCATGGGTTCTCAGGGAAGGAAATGGTGA 957 0.4817 MDLDDFRSILDTAGVDVWAFFDAAIDVASTDNADELKRRRDGIVERLYAATATPPRCLNCEANAVEAHNQQNKSSEDEDLDPFGGLFDDEQKKILEIKHQLEDPHQSEDSLAELLQNLADMDITFQALEETDIGRNVNRLRKHSSSEVRRLVKLLVRKWKEIVDEWVKLKAPGEPATASTVIGDDEDSPQQRNQLNGHHQIPDFACSPNPENGNFESSEPKPIPRKEALPKPAQKSPSPLPSVPTPPPPQNRQKESNFDAERLASARKRLQENYKEAANAKKQRTIQVMDLHELPKPKAKNVFFGKNKGGMGSQGRKW* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2779 318 MobiDBLite consensus disorder prediction 183 200 - -
Ahy3g2779 318 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 88 175 IPR035441 -
Ahy3g2779 318 MobiDBLite consensus disorder prediction 174 263 - -
Ahy3g2779 318 MobiDBLite consensus disorder prediction 299 318 - -
Ahy3g2779 318 Coils Coil 111 131 - -
Ahy3g2779 318 SMART TFS2_5 94 165 IPR003617 GO:0005634
Ahy3g2779 318 CDD TFIIS_I 91 164 - -
Ahy3g2779 318 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 318 - -
Ahy3g2779 318 Coils Coil 260 287 - -
Ahy3g2779 318 MobiDBLite consensus disorder prediction 234 251 - -
Ahy3g2779 318 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 92 172 IPR035441 -
Ahy3g2779 318 Pfam TFIIS helical bundle-like domain 114 163 IPR017923 -
Ahy3g2779 318 ProSiteProfiles TFIIS N-terminal domain profile. 89 166 IPR017923 -
Ahy3g2779 318 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 318 IPR044790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2779 Ahy-Chr3 121843616 121846051 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Ahy3g2779 Med26 5.00E-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2779 - - aip:107630962 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3104 13 125007420 125009790 Ahy3g2779 3 121843616 121846051 hybridization
Ahy3g2779 3 121843616 121846051 Ahy20g1960 20 109924524 109928061 PCT
Ahy3g2779 3 121843616 121846051 Ahy10g1527 10 88760382 88763848 PCT
Ahy20g1960 20 109924524 109928061 Ahy3g2779 3 121843616 121846051 PCT
Ahy10g1527 10 88760382 88763848 Ahy3g2779 3 121843616 121846051 PCT