Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2770 ATGATTTCAGCTATTTCGTGGATACCGATAGGTGCTTCGAAGGCGGAACCCACAATAGCTGAACCTCCTTCCAAGGAAGAAATTCAAGATATAATCACCACCGCCGCCGCCAGTACAGCAGACAGTGAAAATGAGGAAGAAGCAGGGGATGAACGCATGGATGATGCCGGTGGTGCCGTTGATGAAGTTGTGCGAGCACTCAATGTTGCTGATGCTCTCGGGAAGGCTGATAAATTGGACGATATTGCCCTCGGTTTGAAGGAGCTTGACATGGAACGTTACGATGATGAAGATGAAGGAGTTGAGGTATTTAGTTCCGGGATTGGTGATCTTTATTATCCAAGTAACGACCTGGATCCTTATATGGATCCTTATATCAAAGATAAGAACGATGATGATGACTCTGAGGAACTCGAAGACATGATTATTAATCCAACTGATTCCGTCATTGTTTGTGCTCGTACTGAGGATGATCTCAGTCTTCTCGAGGTTCATATACTTGAGGACGCCGGTACTAGTGAGATGAACATGTATGTCCATCATGATATCATAATTCCTGCATTTCCACTATCCACAGCGTGGCTTGACTGCCTTCAAGGAAGAGAGAAAGGAAACTTCTTAGCTGTTGGTTCAATGGAACCGTCAATAGAAATTTGGGACCTTGATGTTATTGATGCAGTGCAGCCATGCATGGTTTTAGGTGGCATTTCAGAGAAAAAGAAGAAGGGGAAGAAGAAATCAATCAAATACAAAGATGACAGTCACACTGACTCTGTACTTGGTCTTGCCTGGAACAAAAAGATCAGGAATGTACTTGCTAGTGCCAGTGCTGACAAGCGAGTCAAGATTTGGGATGTGGCTACTGGGAAGTGTGAGAGTACAATGGAGCATCACTCAGACAAGGTTCAAGCAGTTGCTTGGAATCATCATGAACCAAAAATTCTTCTTAGTGGTTCATTTGATCATACTGTGATCCTGAGGGATGGAAGGATGCCATCCCATCCTGGTTATAAGTGGTCAGTCACAGCTGATGTCGAGAGCTTGGCCTGGGATCCACACACTAACCACGATTTTGTGGCGAGTCTCGAGGATGGTACTGTCAAGTGTTTTGATGTTCGGACCGCAATGTCTGAATCCACATCTGATCTAAGTTCTACATTTACTCTTCATGCACATGACAAAGCTGTTACCTCAGTATCCTATAATGTGTCAGCACCTAATCTACTTGCTACTGGATCGATGGACAAAACGGTAAAGCTTTGGGATTTATCGAACAACCAACCATCTGTTGTGGCATCTAAAAACTCCAATGCTGGAGCTGTATTTTCTATTTCGTTTTCAGAGGACAACCCCTTTGTGTTGGCTATAGGAGGCTCAGAGGGAAAATTGCAAGTTTGGGACACTTTATCTGAGTCTGCTGTCTCTCGGCGTTATGAAAATTACAACAAGAATAGAACTCGGTCGTGA 1467 0.4397 MISAISWIPIGASKAEPTIAEPPSKEEIQDIITTAAASTADSENEEEAGDERMDDAGGAVDEVVRALNVADALGKADKLDDIALGLKELDMERYDDEDEGVEVFSSGIGDLYYPSNDLDPYMDPYIKDKNDDDDSEELEDMIINPTDSVIVCARTEDDLSLLEVHILEDAGTSEMNMYVHHDIIIPAFPLSTAWLDCLQGREKGNFLAVGSMEPSIEIWDLDVIDAVQPCMVLGGISEKKKKGKKKSIKYKDDSHTDSVLGLAWNKKIRNVLASASADKRVKIWDVATGKCESTMEHHSDKVQAVAWNHHEPKILLSGSFDHTVILRDGRMPSHPGYKWSVTADVESLAWDPHTNHDFVASLEDGTVKCFDVRTAMSESTSDLSSTFTLHAHDKAVTSVSYNVSAPNLLATGSMDKTVKLWDLSNNQPSVVASKNSNAGAVFSISFSEDNPFVLAIGGSEGKLQVWDTLSESAVSRRYENYNKNRTRS* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2770 488 MobiDBLite consensus disorder prediction 36 57 - -
Ahy3g2770 488 Pfam WD domain, G-beta repeat 386 422 IPR001680 GO:0005515
Ahy3g2770 488 ProSitePatterns Trp-Asp (WD) repeats signature. 409 423 IPR019775 -
Ahy3g2770 488 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 389 427 - -
Ahy3g2770 488 ProSiteProfiles Trp-Asp (WD) repeats profile. 434 476 IPR001680 GO:0005515
Ahy3g2770 488 Gene3D - 101 334 IPR015943 GO:0005515
Ahy3g2770 488 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 480 - -
Ahy3g2770 488 ProSitePatterns Trp-Asp (WD) repeats signature. 272 286 IPR019775 -
Ahy3g2770 488 Gene3D - 338 484 IPR015943 GO:0005515
Ahy3g2770 488 ProSiteProfiles Trp-Asp (WD) repeats profile. 389 431 IPR001680 GO:0005515
Ahy3g2770 488 PRINTS G protein beta WD-40 repeat signature 272 286 IPR020472 -
Ahy3g2770 488 PRINTS G protein beta WD-40 repeat signature 409 423 IPR020472 -
Ahy3g2770 488 PRINTS G protein beta WD-40 repeat signature 454 468 IPR020472 -
Ahy3g2770 488 PANTHER PERIODIC TRYPTOPHAN PROTEIN 1 1 480 IPR044285 GO:0006364
Ahy3g2770 488 ProSiteProfiles Trp-Asp (WD) repeats profile. 252 294 IPR001680 GO:0005515
Ahy3g2770 488 SUPERFAMILY WD40 repeat-like 203 473 IPR036322 GO:0005515
Ahy3g2770 488 Pfam Anaphase-promoting complex subunit 4 WD40 domain 251 309 IPR024977 -
Ahy3g2770 488 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 252 290 - -
Ahy3g2770 488 SMART WD40_4 288 328 IPR001680 GO:0005515
Ahy3g2770 488 SMART WD40_4 181 220 IPR001680 GO:0005515
Ahy3g2770 488 SMART WD40_4 427 467 IPR001680 GO:0005515
Ahy3g2770 488 SMART WD40_4 332 371 IPR001680 GO:0005515
Ahy3g2770 488 SMART WD40_4 243 285 IPR001680 GO:0005515
Ahy3g2770 488 SMART WD40_4 382 422 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2770 Ahy-Chr3 121689077 121695133 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2770 269 467 U-box Gene Family AT2G33340 30.769 2.62e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2770 K14791 - gmx:100807947 715.687