Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2764 ATGATTTCAGCTATTTCGTGGATACCGATAGGTGCTTCGAAGGCGGAACCCACCGTAGTTGAACCTCCTTCCAAGGAAGAAATTCAAGATATAATCACTGCCGCCAGTGGAGCAGACAGTGAAAATGAGGAAGAAGCAAGTGATGAACGCATGGATGATGCCGGTGGCGCCGTCGATGAAGTTGCGCGAGCACTCGATGTTGCTGATGCTCTCGGGAAGGCCGATAAATTGGACGATATTGCCCTCGGTTTGAAGGAGCTTGACATGGAACATTACGATGATGAAGATGAAGGAGTTGAGGTATTTAGTTCCGGGATTGGTGATCTTTATTATCCAAGTAACGACCTGGATCCTTATATCAAAGATAAGAACGATGATGATGACTCCGAGGAACTCGAAGACATGATCATTAATCCAACTGATTCTGTCATTGTTTGTGCTCGTACTGAGGACGATCTCAGTCTTCTCGAGGTTCATATACTTGAGGACGTCGGTACTAGTGAGATGAACATGTATGTCCATCATGATATCATAATTCCTGCATTTCCACTATCCACAGCTTGGCTTGACTGCCTTCAAGGAAGAGAGAAAGGAAACTTCTTAGCTGTTGGTTCAATGGGACCGTCAATAGAAATTTGGGACCTTGATGTTATTGATGCAGTGCAGCCATGCATGGTTTTAGGTGGCATTTCAGAAAAAAAGAAGAAGGGAAAGAAGAAATCAATCAAATACAAAGATGACAGTCACACTGACTCTGTACTTGGTCTTGCCTGGAACAAAGCGTTCAGGAATATACTTGCTAGTGCCAGTGCTGACAAGCGAGTCAAGATTTGGGATGTGGCTACTGGAAAGTGTGAGAGTACAATGGAGCATCACTCAGACAAGGTTCAAGCAGTTGCTTGGAATCATCGTGAACCAGAAATTCTTCTTAGTGGTTCATTTGATCATACTGTGGTCCTGAGGGATGGAAGGATGCCATCCCATCCTGGTTATAAGTGGTCAGTCACAGCTGATGTCGAGAGCTTGGCCTGGGATCCACACACTGAGCACTATTTTGTGGTGAGTCTCGAGAATGGTACTGTCAAGTGTTTTGATGTTCGGACCGCAAAGTCTGAATCCACATCTGATCTAAGTTCTACATTTACTCTTCATGCACATGACAAAGCTGTTACCTCAGTATCCTATAACGTCTCAGCACCTAATCTACTTGCTACTGGATTGATGGACAAAACGGTAAAGCTTTGGGATTTATCGAATAACCAACCATCTGTTGTGGCATCTAAAAACTCCAATGCTGGAGCTGTATTTTCTATTTCGTTCTCAGAGGACAACCCCTTTGTGTTGGCTATAGGAGGCTCAGAGGGAAAATTGCAAGTTTGGGACACTTTATCTGAGTCTGCTGTCTCTCGGCGTTATGAAAATTACAACAAGAATAGAACTCGGTCGTGA 1449 0.441 MISAISWIPIGASKAEPTVVEPPSKEEIQDIITAASGADSENEEEASDERMDDAGGAVDEVARALDVADALGKADKLDDIALGLKELDMEHYDDEDEGVEVFSSGIGDLYYPSNDLDPYIKDKNDDDDSEELEDMIINPTDSVIVCARTEDDLSLLEVHILEDVGTSEMNMYVHHDIIIPAFPLSTAWLDCLQGREKGNFLAVGSMGPSIEIWDLDVIDAVQPCMVLGGISEKKKKGKKKSIKYKDDSHTDSVLGLAWNKAFRNILASASADKRVKIWDVATGKCESTMEHHSDKVQAVAWNHREPEILLSGSFDHTVVLRDGRMPSHPGYKWSVTADVESLAWDPHTEHYFVVSLENGTVKCFDVRTAKSESTSDLSSTFTLHAHDKAVTSVSYNVSAPNLLATGLMDKTVKLWDLSNNQPSVVASKNSNAGAVFSISFSEDNPFVLAIGGSEGKLQVWDTLSESAVSRRYENYNKNRTRS* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2764 482 Pfam Anaphase-promoting complex subunit 4 WD40 domain 245 303 IPR024977 -
Ahy3g2764 482 Gene3D - 327 478 IPR015943 GO:0005515
Ahy3g2764 482 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 383 421 - -
Ahy3g2764 482 PANTHER PERIODIC TRYPTOPHAN PROTEIN 1 1 474 IPR044285 GO:0006364
Ahy3g2764 482 MobiDBLite consensus disorder prediction 34 57 - -
Ahy3g2764 482 SUPERFAMILY WD40 repeat-like 197 467 IPR036322 GO:0005515
Ahy3g2764 482 ProSiteProfiles Trp-Asp (WD) repeats profile. 428 470 IPR001680 GO:0005515
Ahy3g2764 482 Gene3D - 90 326 IPR015943 GO:0005515
Ahy3g2764 482 SMART WD40_4 282 322 IPR001680 GO:0005515
Ahy3g2764 482 SMART WD40_4 376 416 IPR001680 GO:0005515
Ahy3g2764 482 SMART WD40_4 237 279 IPR001680 GO:0005515
Ahy3g2764 482 SMART WD40_4 421 461 IPR001680 GO:0005515
Ahy3g2764 482 SMART WD40_4 326 365 IPR001680 GO:0005515
Ahy3g2764 482 SMART WD40_4 175 214 IPR001680 GO:0005515
Ahy3g2764 482 ProSiteProfiles Trp-Asp (WD) repeats profile. 246 288 IPR001680 GO:0005515
Ahy3g2764 482 ProSitePatterns Trp-Asp (WD) repeats signature. 266 280 IPR019775 -
Ahy3g2764 482 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 246 284 - -
Ahy3g2764 482 PRINTS G protein beta WD-40 repeat signature 266 280 IPR020472 -
Ahy3g2764 482 PRINTS G protein beta WD-40 repeat signature 403 417 IPR020472 -
Ahy3g2764 482 PRINTS G protein beta WD-40 repeat signature 448 462 IPR020472 -
Ahy3g2764 482 ProSiteProfiles Trp-Asp (WD) repeats profile. 383 425 IPR001680 GO:0005515
Ahy3g2764 482 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 474 - -
Ahy3g2764 482 ProSitePatterns Trp-Asp (WD) repeats signature. 403 417 IPR019775 -
Ahy3g2764 482 Pfam WD domain, G-beta repeat 380 416 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2764 Ahy-Chr3 121565940 121601067 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2764 263 461 U-box Gene Family AT2G33340 30.288 1.05e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2764 K14791 - gmx:100807947 687.567