Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2749 ATGATGGATACCACAAACCTGCAGCAGAATAATAATGCTAGTGTCTTCACTGCTGCTACTTGGACAGAAGCTGATCATAATCACATCATTCACCAAATCCCTAACATCATGGCTTCTGGGGTTTTCCCAAACTACCATCACCTTCTTCAAATTCATCATCATCCCTCAACAACCACTACTGCACTGCCCTCTTCTTCTTCGTCGGGGTTCCTTGGTGACATACTTGGAGTAGTGCACCAAGAACAAGAACAAGATCATGATCACGATCATGAAGATGAAGAGCCAGAAGAGGAGCTTGGAGCCATGAAGGAGATGATGTACAAGATCGCAGCTATGCAGCCCGTGGACATCGATCCCGCCACCATTCGGAAGCCAAAGAGGCGAAACGTTCGCATCAGCGACGACCCACAGAGCGTAGCGGCGCGCCACCGCAGGGAGAGGATCAGCGAGAAGATTCGGATCCTGCAGAGGCTTGTTCCCGGTGGAACAAAGATGGACACAGCTTCCATGCTGGATGAAGCAATTCGCTATGTTAAGTTCTTGAAGAGACAAATCAGGTTGCTTCAATCCACTACTCCTCATCAACCGCCACAATGCAATTATGTTGGTCTTCCAAATAATCCTAACAGTGCCTTTTCTTTAGGCCCTTCTACTTCTGATTGGCCTTTTGCACCCACCACCACGCCCTCCGCCGTGCCTGCCTCATTCGGATTCAATGCCGGAGGAGGTCATCATGCCCCCTCTAGCTTTAATCATCATGAGGTAATTAATGAATGA 777 0.4865 MMDTTNLQQNNNASVFTAATWTEADHNHIIHQIPNIMASGVFPNYHHLLQIHHHPSTTTTALPSSSSSGFLGDILGVVHQEQEQDHDHDHEDEEPEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSTTPHQPPQCNYVGLPNNPNSAFSLGPSTSDWPFAPTTTPSAVPASFGFNAGGGHHAPSSFNHHEVINE* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2749 258 Pfam Helix-loop-helix DNA-binding domain 142 181 IPR011598 GO:0046983
Ahy3g2749 258 CDD bHLH_AtIND_like 133 190 - -
Ahy3g2749 258 Gene3D - 135 196 IPR036638 GO:0046983
Ahy3g2749 258 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 21 240 - -
Ahy3g2749 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 137 199 IPR036638 GO:0046983
Ahy3g2749 258 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 21 240 IPR045843 GO:0003700|GO:0006355
Ahy3g2749 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 181 IPR011598 GO:0046983
Ahy3g2749 258 SMART finulus 138 187 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2749 Ahy-Chr3 120862979 120863780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2749 99 197 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 89.899 1.87e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy3g2749 HLH 1.30E-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2749 - - aprc:113856609 284.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3080 13 123691340 123692654 Ahy3g2749 3 120862979 120863780 hybridization
Ahy3g2749 3 120862979 120863780 Ahy20g1992 20 113094525 113095369 PCT
Ahy3g2749 3 120862979 120863780 Ahy10g1555 10 90864413 90865334 PCT
Ahy20g1992 20 113094525 113095369 Ahy3g2749 3 120862979 120863780 PCT
Ahy10g1555 10 90864413 90865334 Ahy3g2749 3 120862979 120863780 PCT