Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2725 ATGACCATTCCACACTTATTCAGATGCCCTATCAGTTTGGACTTGTTTGAAGATCCAGTGACTCTATGCACGGGTCAAACCTATGACAGATCAAGCATAGAGAAATGGTTAGGTACAGGTAACCTGATATGCCCTGTCACAATGCAGAAGCTCCATGACCCTTCCATTGTTCCCAATCACACCCTCCGCCACTTGATCCACCAGTGGCTTCAACTTGGTCCTCAATTTCACCCTGGTAACTCTGCAACTATTGATTCTCTAGCTGCTTTGAAACACACCCTTCAATCTCAAGAGGATGATACCTTAGAGAACAAGCTCCAAGTACTTGAGAAAATCAATGTCTTCTTTTCTGGTGAGTATAGTTCTTTCAGCAGATCATGTTTCGTACAACTTGGTCTTTTGCCTCTGCTCCTGGAACTAGTTTTTGGAGGAGGAACAATAGAAGAATCTCATGTTGTATCAAATAATGATCACATGAAATTTATAGAGATTGCACTTGGTTGCATTGTGAAACTGCTGCATCTTGGTTATGATTTGGAGGCTCTAAATATTATCAAAGATGATGAGTCTAAATTAGCAACATTTGTGGTGTTATTTGAAAAAGGCACAATTACTGTTAAATCTAGCTTGTGTCATATTATAGAGTCAGCATCATCATCTGAGACAACACAAGAGTTATGTTATGTTTTCGGAAACACTCAGAAACTAGTGCATGAGATTGTTTTAGTACTTGTTCAAAATTGTGATGCTTCTGAGGATGCAGTTAAGGCCATTTTAGCACTGTGTTCATTGAATTCCAACAGAGAGAGTTTGGTGAGAGAAGGAGCAATAGAAGGGATCATAACATACATTTCAATGATTTCATCATCATCAGGTAATGAAATTACTCAAATTAGAGGACAAAACAAGAAACTTGTGACTTCAATAGCAATGGGAATAGTAGTAAAACTATTGGAGCTAGAGAGTGGTAGAGAGACATTGGTGAGTCACCCAAACGGGGTTGATACTTTGGTGAAGTTGGTGTTCAGTGTAAAATGTGATCAAGATTGCAGTGATAGTGCTGTTGAGGCACTTTCCATTGTTTGTGGAGATTATATGAGTGCAAGAGAACAAGCCATTGGTGCTGGGGTTATGACAAAGTTGCTGTTGCTTATGCAGAGTCATTGTGCCACCACTACTAAATCAAAGACCAGAATGCTCCTCAAATTGCTCAAATCCAAGTGGATTCAGGTGCCAAAGTAG 1242 0.3961 MTIPHLFRCPISLDLFEDPVTLCTGQTYDRSSIEKWLGTGNLICPVTMQKLHDPSIVPNHTLRHLIHQWLQLGPQFHPGNSATIDSLAALKHTLQSQEDDTLENKLQVLEKINVFFSGEYSSFSRSCFVQLGLLPLLLELVFGGGTIEESHVVSNNDHMKFIEIALGCIVKLLHLGYDLEALNIIKDDESKLATFVVLFEKGTITVKSSLCHIIESASSSETTQELCYVFGNTQKLVHEIVLVLVQNCDASEDAVKAILALCSLNSNRESLVREGAIEGIITYISMISSSSGNEITQIRGQNKKLVTSIAMGIVVKLLELESGRETLVSHPNGVDTLVKLVFSVKCDQDCSDSAVEALSIVCGDYMSAREQAIGAGVMTKLLLLMQSHCATTTKSKTRMLLKLLKSKWIQVPK* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2725 413 CDD RING-Ubox_PUB 7 49 IPR045210 -
Ahy3g2725 413 SMART Ubox_2 6 69 IPR003613 GO:0004842|GO:0016567
Ahy3g2725 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 73 IPR013083 -
Ahy3g2725 413 Gene3D - 189 408 IPR011989 -
Ahy3g2725 413 PANTHER OS02G0542800 PROTEIN 1 407 - -
Ahy3g2725 413 ProSiteProfiles U-box domain profile. 2 76 IPR003613 GO:0004842|GO:0016567
Ahy3g2725 413 Pfam U-box domain 3 71 IPR003613 GO:0004842|GO:0016567
Ahy3g2725 413 PANTHER WDSAM1 PROTEIN 1 407 IPR045185 GO:0061630
Ahy3g2725 413 SUPERFAMILY ARM repeat 89 393 IPR016024 -
Ahy3g2725 413 SUPERFAMILY RING/U-box 2 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2725 Ahy-Chr3 120143149 120144390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2725 3 408 U-box Gene Family AT3G19380 28.810 1.99e-35 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2725 - - adu:107479288 794.653