Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2705 ATGGAAAGGAGCGTTAGCAGAACCCACAAGAAGCCAATGAGCCTTAACGACTCTCATCATCGCTTCCTTCAAGACCTCTCCGCTCATCCTAAATCCAAACCCTCTCCCTCTCCCTCTGCCTCCGAGAAGGAGCACGATGAAACTCCCATTCAATCAGATGATCATACTATTCCCCGATTCTCTGCTATCACCGACTTCGATTCTCCTATCGGGCCTGACTCGGAGGAGAAACCCTCTTCCATCGAGGTCAAACCTCCGCGCTCTTCTCCGAAGGAAAGTTCACAGGCTTCATTGGGGACAACGCGTATTTCAGATGACGAGAAGAAGACCAAGCTGAAGTTGCAGGGTCGTCGCCGCCTCTGCAAAGTTGCGACTTCAGACGATTGTGATAAGGAGGCAGCGGTTGATGAATCCAGGTTCGATGAGCTCATCGAGCTTGATTCGCCACTTCCGGCACCCAAAAACGTGATCCAGATTGACGATAGTGTCGGTAAGAACGACATTAGGGATATTTTGAATGAGTTGAATTCAAAGTTCGAGTTGCTGTCAGTTGAGAGGAAGCGAGAGACGAAGCAGGTGAAACCGATTGAGGGTTCTTCAGCTTTGTTTAGAGGAAAGGAAACTTATGAGGATGATGAGGTCGTAGAGTTCGGGAGTGCGGGGTCTTCATTCTCTCCACAGCAGGATCCGAGTAACGACCAGTCACAGGGTGCCAAGTATGCTGTTGGTGATGCCGGAATTGAGTATGTGGAAGATGATGACTCTCCTGCCAAGTTTGCTGGTGGTGATGGTGGAATTGAGTATGTGCAAGATGATGACTCTCCTGCCAAGTTTGCTGGTGGTGATGGTGGAATTGAGTATGTGCAAGATGATGACTCAGATGATTCTGTTGAAGAATTGGTTAATTTTGAGCCAAAGGGTGATGGCTCCATCACTCTGCCAGGCCCCAAATATACTTTTAAGTTGCCCTCTAAAATTGCGAAAATGTTGTATCCACATCAGAGGGATGGATTGAAGTGGCTCTGGTCTTTGCATTGCTTGGGTAAAGGTGGAATCTTGGGAGATGACATGGGTTTGGGGAAAACAATGCAGATGTGTGGCTATCTTGCTGGACTCTTTCATTCTCGAATTATTAAAAGGGCATTGATTGTGGCCCCAAAAACCTTGTTGCCCCATTGGATCAAGGAATTATCCGCTGTTGGTCTTTCTGAAAAGACGAGAGAATATTTTGGAACTAATACAAAAGCCAGAGAATATGAACTTCAGTACATACTTCAGGATAAAGGTGTTCTTCTAACAACATATGATATTGTCCGCAACAATTCTAAGTCCTTGCGAGGGAGTTATCATTTTGATGATGAGGACAATGAAGATGGTGCCACATGGGACTATATGATCCTTGATGAGGGGCACCTTATAAAGAACCCAAGCACACAGAGGGCTAAAAGTTTGCTTGAGATACCATGTAGCCACCGCATTATCATTAGTGGCACACCATTGCAAAATAATCTTAAGGAGTTGTGGGCTTTGTTCAATTTCTGCTGCCCTGAGTTACTTGGTGACAATAAATGGTTCAAAGAAAAATTTGAAGTACCCATACTTCGTGGAAATGACAAACATGCTACGGACAGAGATAAGCGTGTAGGATCTGCTATAGCAAAGGACTTAAGAGATCGTATTCAACCTTACTTTTTGCGACGTTTGAAGAGTGAGGTTTTCAATCAAGATGATGACAAAACAACTGCAAAACTTTCCAAGAAAGAAGAGATTATTGTTTGGCTTCGATTGACTAGTATTCAGCGACATCTATATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCGCCACTTGCTGCCCTTACGATTTTGAAGAAAATATGTGATCATCCACTTCTGTTGACAAAGCGGGCAGCTGAGGATGTATTGGAAGGGATGGACTCAATGCTAAAGCCAGAAGAAGTTAATGTTGCTGAAAAATTGGCGATGCACATAGCAGATGTTACAGACACAGATAGGTTCAAAAATGAGCATGGTCATGATGTATCATGCAAAATTTCTTTCATCATGTCATTATTGGATAATCTGATCCCAGAAGGGCATAGTGTCCTTATCTTTTCTCAGACTCGCAAAATGCTTAACATTATTCAGGAATGCCTAGCATCCAAAGGTTATGACTTTCTACGGATTGATGGAACAACAAAAGCCTGTGACAGATTAAGGATTGTTAATGAATTCCAAGCAGGTGCAAGTGCCCCTATATTTCTGTTGACATCTCAAGTAGGTGGTTTAGGACTCACACTCACAAGAGCAGATCGTGTTATTGTTGTTGATCCTGCTTGGAACCCAAGTACGGATAACCAAAGTGTCGACCGTGCATATCGTATTGGTCAAAAGAAAGATGTTCTTGTTTATAGACTGATGACATGTGGAACTGTTGAAGAAAAGATCTATAGGAAGCAGGTATATAAAGGAGGATTATTCAGAACTGCTACTGAACAAAAAGAACAAACTCGCTACTTTAGTCAGCAGGATCTTAGGGAGCTTTTCAGCCTTCCAAAAGAGGGGTTTGATGTATCTGTTACCCAACGACAATTGGATGAGGAGCATGATGGTCAACATACATTGAATGACACTTTTAAAGCACATATAGAATTCCTGAGAAGTCAAGGTATAGCAGGAGTTAGCCACCATAGTTTACTCTTTTCCAAAACAGGACCAGTTCAAGCTGCTCCTGAAGATGATGATATGACGAGGAGGAATCAAGGGACTAGATATATTGGTACTTCAGTATCGTCTTCTTCAAATGACCGAATGGCTGATGGAGCTGAGTTTGCCTCTAAACCCAAGGATTTAGATCGAAGCAAAAAGGGTTTTTCCCCTAGCAGCGATGGTAAAATGACAGAGTCGGAAATCAAAGATAGAATTAAGCGGCTCTCTCAAACTCTGTCAAATACGGCGATGATTTCTAGATTACCGGATAAGGGGGCGAAACTACAGAAAAGGTTGACGGAGCTGAATTCGGAGCTTGCCAGATTAGGGATGGAAGAAAGAACTGGTGCTGATCTGGATGATTTCACCAGTGAGTTTCAAAGAGTGTTGAATGTATAG 3123 0.432 MERSVSRTHKKPMSLNDSHHRFLQDLSAHPKSKPSPSPSASEKEHDETPIQSDDHTIPRFSAITDFDSPIGPDSEEKPSSIEVKPPRSSPKESSQASLGTTRISDDEKKTKLKLQGRRRLCKVATSDDCDKEAAVDESRFDELIELDSPLPAPKNVIQIDDSVGKNDIRDILNELNSKFELLSVERKRETKQVKPIEGSSALFRGKETYEDDEVVEFGSAGSSFSPQQDPSNDQSQGAKYAVGDAGIEYVEDDDSPAKFAGGDGGIEYVQDDDSPAKFAGGDGGIEYVQDDDSDDSVEELVNFEPKGDGSITLPGPKYTFKLPSKIAKMLYPHQRDGLKWLWSLHCLGKGGILGDDMGLGKTMQMCGYLAGLFHSRIIKRALIVAPKTLLPHWIKELSAVGLSEKTREYFGTNTKAREYELQYILQDKGVLLTTYDIVRNNSKSLRGSYHFDDEDNEDGATWDYMILDEGHLIKNPSTQRAKSLLEIPCSHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFEVPILRGNDKHATDRDKRVGSAIAKDLRDRIQPYFLRRLKSEVFNQDDDKTTAKLSKKEEIIVWLRLTSIQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEVNVAEKLAMHIADVTDTDRFKNEHGHDVSCKISFIMSLLDNLIPEGHSVLIFSQTRKMLNIIQECLASKGYDFLRIDGTTKACDRLRIVNEFQAGASAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVLVYRLMTCGTVEEKIYRKQVYKGGLFRTATEQKEQTRYFSQQDLRELFSLPKEGFDVSVTQRQLDEEHDGQHTLNDTFKAHIEFLRSQGIAGVSHHSLLFSKTGPVQAAPEDDDMTRRNQGTRYIGTSVSSSSNDRMADGAEFASKPKDLDRSKKGFSPSSDGKMTESEIKDRIKRLSQTLSNTAMISRLPDKGAKLQKRLTELNSELARLGMEERTGADLDDFTSEFQRVLNV* 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2705 1040 MobiDBLite consensus disorder prediction 220 238 - -
Ahy3g2705 1040 MobiDBLite consensus disorder prediction 38 53 - -
Ahy3g2705 1040 CDD SF2_C_SNF 684 812 - -
Ahy3g2705 1040 MobiDBLite consensus disorder prediction 86 101 - -
Ahy3g2705 1040 SMART ultradead3 325 528 IPR014001 -
Ahy3g2705 1040 PANTHER OS04G0692700 PROTEIN 309 922 - -
Ahy3g2705 1040 MobiDBLite consensus disorder prediction 931 975 - -
Ahy3g2705 1040 MobiDBLite consensus disorder prediction 947 964 - -
Ahy3g2705 1040 Pfam Helicase conserved C-terminal domain 689 801 IPR001650 -
Ahy3g2705 1040 Gene3D - 589 887 IPR027417 -
Ahy3g2705 1040 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 692 851 IPR001650 -
Ahy3g2705 1040 PANTHER SNF2/RAD54 FAMILY MEMBER 309 922 - -
Ahy3g2705 1040 Coils Coil 1000 1020 - -
Ahy3g2705 1040 SMART helicmild6 718 801 IPR001650 -
Ahy3g2705 1040 MobiDBLite consensus disorder prediction 1 110 - -
Ahy3g2705 1040 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 583 884 IPR027417 -
Ahy3g2705 1040 Coils Coil 172 192 - -
Ahy3g2705 1040 MobiDBLite consensus disorder prediction 1 27 - -
Ahy3g2705 1040 Pfam SNF2-related domain 345 637 IPR000330 GO:0005524|GO:0140658
Ahy3g2705 1040 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 567 IPR027417 -
Ahy3g2705 1040 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 342 517 IPR014001 -
Ahy3g2705 1040 MobiDBLite consensus disorder prediction 219 239 - -
Ahy3g2705 1040 Gene3D - 315 588 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2705 Ahy-Chr3 119628691 119635235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2705 330 855 RAD5 or RAD16-like Gene Family AT1G02670 24.653 9.58e-36 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy3g2705 SNF2_N 2.50E-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2705 K20093 - gmx:100779283 1419.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3036 13 122211583 122217968 Ahy3g2705 3 119628691 119635235 hybridization