Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2696 ATGTGGATGAAGTGCAGCTCGCTTCAGTATAGGATCACCTTATTACAAAGAAGCATGGTTGTTCATATCCCTCAACCGCTCTTTCCGTTTCAGCCATTTACATTTAGGAGTATTGCGTCTATCCTGCAAGAAGAAAGGCTTGATCAGAATTTTCTTTTTGATGTGCTAGCAGAGGTTATAGGGAAGGAGGACCCAAAGGATTTGGTTACCAAGCAAGGGCAGGAAAGCAAGCGGTTAGGGCTGTTAGTGGAGGACCTTGAGAAGAATTCTATCAGTTGTACCCTATTTGGTTCACTGGTAGATTTGATCCAACCCTATTTAGATGGTGATAAGACTGAACCTCTCATAGTTGCATTCCAACTATTTAGAGCAAAGGAATGGAATGGGAAGATTAGTATTCAGAGTAGTTTTGACACATCTAACATCCACATAAATCCCAATATTAAAGAGGCCGAACTATTTAAAAAGAGTTTGGTGGACAGCACTCAAGGTGATAGTTGTTTTTCATCCCAGAGGATAAGTCATATGTCATCCAGTTCATATCGATCTGCTATTGATGAGCTCAGAAAAGGGATCTGCAAAGTTGAAACAATAGACAGTGTGTTGAATGCAAGTGATGTTGGGTTTAAATGGATACTATGTACGATTGTTGACTTTGATGTCGGGAGGAATGATTGGTTCTTCATAGCTTGCAAGTATTGTCATAAAAAATGCAAAAAGATAGAGGAGAGATTTGAATGTGACCATTGCCGCAAGAAGGCCGTTCAGGTAGACTTGCGGTATAAGCTTCAAGCTTATGTTTCCGATGCAACTGGAAGTATGTGTGTAGTGTTGTGGGATACCGAAGCAAGCCAAATTGTAGGGTTGAGTGCAACCAAAGTCAGAGAAACCTACAGTCAGGATGATTCTGATGATTCTTACCCGGAGGTGTTGAAGACGGCCTTGGACATGAAGTTGCTATTAAGGATTAATGTGAAAAGTAGTAATTTGAGTGGTAATGAAAATGTCTATAATGTCACAAAAGCTTGCCTTGATGAGCACCTTATCCATAAATACAGCCAGTCTGTAAATGAACAATCTACGAAGGGGTTGGATAATGTTACTAGCTTGGATTGTACTACTGATGTTGTTTATCTTGGTGATGATGTATCTGTCCAAGGTGGACAAGAATCTGTCAATGAGTCTAAGACGGTTACCAGCAGCAAGGGAAGAGCTAAAAGGATTGATGCAGGAATTATAGGAGTAGTTGCGAAAGACTTGGAAAGTATACCCGTAGGGCAGTTGTCAAGTACTAAGAAGCCAAGGTTGAGTATTAAGAAAGAAAAGACTCTCTAG 1335 0.4045 MWMKCSSLQYRITLLQRSMVVHIPQPLFPFQPFTFRSIASILQEERLDQNFLFDVLAEVIGKEDPKDLVTKQGQESKRLGLLVEDLEKNSISCTLFGSLVDLIQPYLDGDKTEPLIVAFQLFRAKEWNGKISIQSSFDTSNIHINPNIKEAELFKKSLVDSTQGDSCFSSQRISHMSSSSYRSAIDELRKGICKVETIDSVLNASDVGFKWILCTIVDFDVGRNDWFFIACKYCHKKCKKIEERFECDHCRKKAVQVDLRYKLQAYVSDATGSMCVVLWDTEASQIVGLSATKVRETYSQDDSDDSYPEVLKTALDMKLLLRINVKSSNLSGNENVYNVTKACLDEHLIHKYSQSVNEQSTKGLDNVTSLDCTTDVVYLGDDVSVQGGQESVNESKTVTSSKGRAKRIDAGIIGVVAKDLESIPVGQLSSTKKPRLSIKKEKTL* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2696 444 Gene3D - 175 353 IPR012340 -
Ahy3g2696 444 Pfam Replication factor-A C terminal domain 223 335 IPR013955 -
Ahy3g2696 444 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 9 340 - -
Ahy3g2696 444 SUPERFAMILY Nucleic acid-binding proteins 208 342 IPR012340 -
Ahy3g2696 444 PANTHER REPLICATION FACTOR A 1, RFA1 9 340 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy3g2696 444 SUPERFAMILY Nucleic acid-binding proteins 33 157 IPR012340 -
Ahy3g2696 444 Gene3D - 28 166 IPR012340 -
Ahy3g2696 444 CDD RPA1_DBD_B_like 69 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2696 Ahy-Chr3 119331041 119333604 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2696 28 336 Core DNA Replication Machinery Family AT4G19130 22.291 3.53e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2696 - K15255 ahf:112780340 860.522