Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2668 ATGTGTGGAAAAATTCAAGCTACTGTCAAGAAACCACTCCTTAATAGGTTTAGGGATCATATAGTTGAAGGACAAGTTTATAGAATGGCATATTTTAGTGTTGTGTCAAATCATGGTAGTTATAGAGCAACTTTCCATGAATTCAAATTGGTTTTCCTTCACCGAACCACTGTTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTGTTTCAACATGTTTCCTTTTTCTGAGCTGCTGAACATGACCCAAGATTATGATTTTTTAGTTGATGTCATTGGACTTTTAACTTCAGTTGGAGAAGAGAAAGAATATGCAAGAGAGGGAAAAATTGTGAAAATGATTGCATTGGAATTAACTTCAAAAGATCTTACAGTGAGATGTGCATTGTTTGGGGATTATGTTAATCAAGTAAATCATTTCCTTGCCTCTGGGTATGTGGAGCAGCCTGTTGTAGTTATTCAACTTGCAAAAGTCAAGTTCTTTCGGGGTCAAGTAGGTCTTCAAAATGTCATGTATGCGACACAAATGTTATTTAATCCTGATATTCCTGAAGTTGTTGAATTCAGGCAGAGTATGATTGAGCAAGGTGTCAGTGGTACCCAGCCACTGTTTATTGCAAATGAAGGTAAGGTTCTCTCCTTGGAAGATGACTTCATGCGTCTAACTAGAAAGTGCAGTATTGAAGAGCTTCAGGATAACAATCAGGAGGGTTCTTTTATCATTTTTGGAGCAATCCAAGGTATTGTTGAGGATGGAGGTTGGTGGTATTCTGCTTGTGTGTGTGGAAAGGGTATCCATCCTCAAAATGGTGCCTATTACTGTGATTTTTGTTTGAAGCACATAACTAATGTGACTCCAAGATTTAAAATTAAAGTGACAGTTGAAGATCATATTGGGGAGGGTATTTTCCTTCTCTTTGATCGTGAGGCTTCCTATTTGCTTAAGAAATCATGTGCTGATTTGTTTACTGAAGTTCAAAGAGATGCAAGTGTTATATGTAGGGATACTTATCCTCCCATATTCCAAGGGCTGATTGGAAAGAAGTTGCTGCTCAAGGTTGATACCAAAGGTGTCCCACATGATACATTTTATGGGACTTTCCGAGTTACGAGAATTTGTGATGATTCCACCATCATTGCAATGTTTGAACTTCCCAATTATGATGCTGATGATGAGTCTTCTCCCAAAAAGGAGCATGACTTACACAAATCTGTTCCTGCTGGAAAAGCTGATGTTGGTATTAAGAAGGAGTCTTCTGATAGTTTTATCAAAATTGAGAAAGATGCTGGTGATTGTGCTGGGATGTTGTGTAAATCCCCAGTTCTTATAGATTTTTTGGCTGAAAAACAGCCTGTTATTTCTGTGGGGAGTGAATTTGTTGGGTTAATTGATGGTGAGCATGGAACGGAAGAGAAAACTCCCAGCAATGATACTCTTAGTGATGATCTTTCTGCTGAAATCGATATATTGCTTAGCTCAACGGAAAAAGAAACTCAGGAGCTGTTGTCCCATGTTCTTGAAGCACCTTCCCAAAATGGAGAGAAGCTTACCCATGAAAATCATGTTGTGACCTCCAAGAGTAAGAGAAATTTGAATCCTCAGTTTGAAGATGTTGCTGTTGATGCAGATGGGCGTGGGTTGAAGGTTGCTAAGGTTAATGGAGTTTGA 1671 0.386 MCGKIQATVKKPLLNRFRDHIVEGQVYRMAYFSVVSNHGSYRATFHEFKLVFLHRTTVVAVDEDVIPKTCFNMFPFSELLNMTQDYDFLVDVIGLLTSVGEEKEYAREGKIVKMIALELTSKDLTVRCALFGDYVNQVNHFLASGYVEQPVVVIQLAKVKFFRGQVGLQNVMYATQMLFNPDIPEVVEFRQSMIEQGVSGTQPLFIANEGKVLSLEDDFMRLTRKCSIEELQDNNQEGSFIIFGAIQGIVEDGGWWYSACVCGKGIHPQNGAYYCDFCLKHITNVTPRFKIKVTVEDHIGEGIFLLFDREASYLLKKSCADLFTEVQRDASVICRDTYPPIFQGLIGKKLLLKVDTKGVPHDTFYGTFRVTRICDDSTIIAMFELPNYDADDESSPKKEHDLHKSVPAGKADVGIKKESSDSFIKIEKDAGDCAGMLCKSPVLIDFLAEKQPVISVGSEFVGLIDGEHGTEEKTPSNDTLSDDLSAEIDILLSSTEKETQELLSHVLEAPSQNGEKLTHENHVVTSKSKRNLNPQFEDVAVDADGRGLKVAKVNGV* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2668 556 PANTHER REPLICATION FACTOR A 1, RFA1 25 323 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy3g2668 556 Gene3D - 216 379 IPR012340 -
Ahy3g2668 556 MobiDBLite consensus disorder prediction 391 410 - -
Ahy3g2668 556 Pfam Domain of unknown function DUF223 4 85 IPR003871 -
Ahy3g2668 556 CDD RPA1_DBD_A_like 4 58 - -
Ahy3g2668 556 Pfam Replication factor-A C terminal domain 244 329 IPR013955 -
Ahy3g2668 556 CDD RPA1_DBD_B_like 91 194 - -
Ahy3g2668 556 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 25 323 - -
Ahy3g2668 556 Gene3D - 2 63 IPR012340 -
Ahy3g2668 556 SUPERFAMILY Nucleic acid-binding proteins 226 357 IPR012340 -
Ahy3g2668 556 SUPERFAMILY Nucleic acid-binding proteins 71 193 IPR012340 -
Ahy3g2668 556 CDD RPA1_DBD_C 228 357 IPR013955 -
Ahy3g2668 556 Gene3D - 65 201 IPR012340 -
Ahy3g2668 556 SUPERFAMILY Nucleic acid-binding proteins 3 63 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2668 Ahy-Chr3 118295373 118303158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2668 4 322 Core DNA Replication Machinery Family AT5G08020 25.223 7.53e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2668 - - adu:107471135 1087.4