Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2624 ATGCATCCTCCTAGAGAGGCTTGGAGGTTGAAAGTTAGGGTTCTAAGGCTTTGGGTTATACCCTCTTTTGGTAACCATGAGGTTCCTAACTCAATGGAGATGATTCTCCTTGATGAGCATTGTGGAAAAATACAAGCTACAATTAAGAAACCACTCCTTAATAGGTTTAGGGATCTTATAGTTGAGGGTCAGGTTTATAGAATGACATACTTTACTGTTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTCCTTCACCGAACCACTGTTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTGTTTCAACATGTTTCCTTTTTCTGATTTGCTGAATATGACTGAAGATTATGATTTTTTAGTTGATGTTATTGGTCTTTTAACTTCAGTGGGAGAAGAGAAAGAATATGCAAAAGAGGGAAAAATTGTGAAAATGATTGTGCTGGAATTAACTTCCAAAGATCTTACCTTGCGATGTACATTGTTTGGGGACTATGTTAATCAAGTAAATCATTTCCTTGCCTCTAGCTATGTGGAGCAGCCTGTTGTAGTCATTCAACTTGCAAAAGTCAAGTTCTTTAGGGGTCAAGTAGGCCTTCAAAATGTGATGTATGCCACTCAAATGTTATTTAATCCTGATCTTCCTGAGGTTGTTGAGTTCAGGCAGAGTATGATTGAGCAAGGGGTGAATGGTACTCAGCCACTGTTTATTGCAAATGAGGGTAAAGTTGTGTCCTTGGAAGATGATTTCATGCGTTTAACTAGAAAATGCACCATTGAAGAGCTTCAAGATAAGAATCAAGAGGGTTCTTTTATCATTTTTGGTACAATCCAAGGTATTGTTGAGGATGGAGGCTGGTGGTATTCTGCTTGTGTGTGTGGAAAGGGTATCTATCCTCAGAATGGTGCATATTACTGTGATTTCTGTTTGAAGCACATAACCAATGTCACTCCAAGATTTAAAGTTAAAATAACAGTTGAAAATCATAGTGGGGAGGGTATTTTCCTTCTCTTTGATCGTGAGGCATCTTATTTGCTTAACAAATCATGTGCTGACTTGTTTAGTGAGGTTCAAAGAGATGCAAGTCTTGTATGTGGGGATACTTATCCTCCCATTTTCCAAGGGCTCATTGGAAAGAAGTTACTGCTTAAGGTTGATACCAAAGGTGTCCCACATGATACATTTTATGGCACTTTTCGAGTTAGGAGAATATGTGATGATCCCACCATTATTACCATGTTTGAACTTCCCAATTATGATGCTGATGACGAGTCTACTCCAAAAAAGGAGCCTGATTTACACAAATCTGTCCTGTTTGGAAAAGGGGATATTGGTATTAAGGAGGAGTCATCAAAGACTTGTATCAAAAGTGAAAAAGTTGCTGGGTCTGAGTTTGCTGCCTTAGTTAATGGTGAAGATGGAAAAGATGAGAAAACACCCACCAATGATACTGTTAGTGATGATCTTTCTGCTGAACTGGATATATTACTTAGCTCACCAGAAAAGGAAACTCAGGAGGTGTTGTCCCATGTTTTCCATGCACGTTGCCAATATGGAGAAAAGGTTACTCATGACAATGATGTTGTCACCTCCAAGGGCAAGAGGAATTTGAATCTCCAATTTGAAGAAGCGGCTACTGTTGCAGATGAGCGTGGGTCTAAGGTTGCCAAGGTTAATGGGGTGTGA 1710 0.3906 MHPPREAWRLKVRVLRLWVIPSFGNHEVPNSMEMILLDEHCGKIQATIKKPLLNRFRDLIVEGQVYRMTYFTVVSNHGSYRATSHEFKLVFLHRTTVVAVDEDVIPKTCFNMFPFSDLLNMTEDYDFLVDVIGLLTSVGEEKEYAKEGKIVKMIVLELTSKDLTLRCTLFGDYVNQVNHFLASSYVEQPVVVIQLAKVKFFRGQVGLQNVMYATQMLFNPDLPEVVEFRQSMIEQGVNGTQPLFIANEGKVVSLEDDFMRLTRKCTIEELQDKNQEGSFIIFGTIQGIVEDGGWWYSACVCGKGIYPQNGAYYCDFCLKHITNVTPRFKVKITVENHSGEGIFLLFDREASYLLNKSCADLFSEVQRDASLVCGDTYPPIFQGLIGKKLLLKVDTKGVPHDTFYGTFRVRRICDDPTIITMFELPNYDADDESTPKKEPDLHKSVLFGKGDIGIKEESSKTCIKSEKVAGSEFAALVNGEDGKDEKTPTNDTVSDDLSAELDILLSSPEKETQEVLSHVFHARCQYGEKVTHDNDVVTSKGKRNLNLQFEEAATVADERGSKVAKVNGV* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2624 569 SUPERFAMILY Nucleic acid-binding proteins 3 102 IPR012340 -
Ahy3g2624 569 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 12 362 - -
Ahy3g2624 569 CDD RPA1_DBD_B_like 130 233 - -
Ahy3g2624 569 CDD RPA1_DBD_C 267 410 IPR013955 -
Ahy3g2624 569 PANTHER REPLICATION FACTOR A 1, RFA1 12 362 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy3g2624 569 SUPERFAMILY Nucleic acid-binding proteins 264 414 IPR012340 -
Ahy3g2624 569 SUPERFAMILY Nucleic acid-binding proteins 110 232 IPR012340 -
Ahy3g2624 569 Gene3D - 104 241 IPR012340 -
Ahy3g2624 569 Gene3D - 1 102 IPR012340 -
Ahy3g2624 569 Pfam Domain of unknown function DUF223 33 122 IPR003871 -
Ahy3g2624 569 CDD RPA1_DBD_A_like 9 97 - -
Ahy3g2624 569 Pfam Replication factor-A C terminal domain 281 367 IPR013955 -
Ahy3g2624 569 Gene3D - 255 417 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2624 Ahy-Chr3 117156754 117163583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2624 1 363 Core DNA Replication Machinery Family AT2G06510 23.560 9.39e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2624 - - adu:107471135 920.998