Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2618 ATGGACAACAATCAACAATCTCAATCACCATCTATAATGCAAGATCAAGCAATGCCAAGAAGACACTACAGAGGGGTTAGGCACCGGCCATGGGGGAAATGGGCCGCGGAGATTCGAGATCCGAAGAAGGCAGCAAGGGTTTGGCTTGGAACTTTCGAAACTGCCGAGGAAGCTGCACTTGCTTATGACGAAGCCGCTCTTAGATTCAAAGGAAGCAAAGCTAAGCTCAACTTTCCAGAAAGGGTTCATCTCACTCGTGAATTCGGTTACCTCACTAACCGTCCTCCAGAACCGGAAATTGGCAATAACAATGGTCAACAAGTACCTAGTACTACTACCACAATTTCTCATGCTTCAGCTTCACAATTTTCTGGCAGTAGTGAGAGTAACAACAACAATTTCAATTATGCTTTTCCTCATTTGTATGGGAATCATAAAAATATGTTTGTTTCTTCCTCTTTGTCTTCGTCTTCGTCTTCATCTTCTGGATTTTCTATGCAATTTGGAGGTTCTTCTTCTAAGTCTCCTCCTATGAATTAA 540 0.4259 MDNNQQSQSPSIMQDQAMPRRHYRGVRHRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDEAALRFKGSKAKLNFPERVHLTREFGYLTNRPPEPEIGNNNGQQVPSTTTTISHASASQFSGSSESNNNNFNYAFPHLYGNHKNMFVSSSLSSSSSSSSGFSMQFGGSSSKSPPMN* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2618 179 MobiDBLite consensus disorder prediction 97 111 - -
Ahy3g2618 179 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ABR1 11 173 - -
Ahy3g2618 179 MobiDBLite consensus disorder prediction 1 25 - -
Ahy3g2618 179 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Ahy3g2618 179 CDD AP2 22 80 IPR001471 GO:0003700|GO:0006355
Ahy3g2618 179 MobiDBLite consensus disorder prediction 1 15 - -
Ahy3g2618 179 MobiDBLite consensus disorder prediction 92 111 - -
Ahy3g2618 179 MobiDBLite consensus disorder prediction 151 179 - -
Ahy3g2618 179 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Ahy3g2618 179 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Ahy3g2618 179 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Ahy3g2618 179 Gene3D AP2/ERF domain 21 81 IPR036955 GO:0003700|GO:0006355
Ahy3g2618 179 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Ahy3g2618 179 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Ahy3g2618 179 PANTHER DNA-BINDING DOMAIN 11 173 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2618 Ahy-Chr3 117024474 117026785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2618 1 131 AP2-EREBP Transcription Factor Family AT5G13330 60.606 5.78e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ahy3g2618 AP2 2.60E-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2618 - - gmx:100793410 152.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2957 13 119483643 119486309 Ahy3g2618 3 117024474 117026785 hybridization
Ahy3g2618 3 117024474 117026785 Ahy18g2896 18 133703750 133706115 PCT
Ahy18g2896 18 133703750 133706115 Ahy3g2618 3 117024474 117026785 PCT