Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2599 ATGTCCAGCACAAACAGCACTTGTCTCATGGAAGAAAGAGAGCTCTCTGATGCCAACAACACCTATCAACTTGTCCCTATTCCTATCATGCCTCCTCCTCAGGTAGTCAATGAAGATTGGTACATGCCAAACAACAACAACAACAACAACAACACTGTTACTACTATCCAAAATCAACCTCCGGATTCAGATTCAGATACAAGGGACATGAACTTCTTTCACCAAGATAACAACAACAGCAACTCTTTCTTCCATCCCTCTTCTTTCCCTTCATCCATGTCGTTCATCACCAACCTTCACTACCCTCATCAGGCCACTCCAAAACCCATGTTTTCTTCTCTTCTAAGTGGCATGATGATCCCTAGCAACACCACCAATAACCCTTTGTTTGATCAAAATGGTGGAAATAATAATAGTTGCCAACAGGTGATGGGGTTTCTTGAACCTCAAGCTTTCGCTACCTCTCCATCAAACGCAGATGCTACTCTCTTGGGGGGTTTAGGCTTTCCAACAAGTTTGAACAACTCATCATCAGACCCCAATAATAATAGCTTATCAGCAACCATGAGCTGTGTAATCCCACAAGAACATGAAGAAGAAGATAAACCGCCCAATAAGTTTGCCCTCTTTGAGGGTTTTCACAATAACATTGAGAATAATACTGGTAGTAGTGCGGTTGCTGCAAGTTCATCATCATGGATGATGAACAACAAGTACTCCAACATACTCATGAGACCTCTTGAATCATTACCTCCATCATCAGGTGCACAACCAACACTCTTTCAGAAGAGAGCAGCACAACACAGGAAAATCAACGTCACAGATGAAAGAGGAAAGGGCAAACTTGATGAGGAGGAACAACAAGGGAATAATAATAATGAAGAAGAGAAAAGGAAGCTGGAGATGGAAGATACTGGAGATGGAAGTTTGTTAAACAGCTATGATGATTATTCTGATCATGACATGGTTGAGGATATGAAGATGGAATCAGAGAGTAGTAGTAAAAACAAGAATATTATTGGTGAAAACAACAACAAAAACAGTAACAATAATCTCAATTTGCAGAAAGGGAATAATAACAAGAAGAAGACAGGGATGCCTGCTAAGAACTTGATGGCTGAACGCCGCAGAAGGAAGAAGCTCAATGACAGACTCTACATGCTCAGATCCGTTGTTCCTAATATCAGCAAAATGGACAGGGCTTCAATACTTGGGGATGCAATTGAATATATGAAAGAACTTCTGCAAAAGATTAATGACCTTCATAACGAATTGCAATCAATGCCTCCAACGGCACCTGCTTCAAGCTTGCATCATCCTTTGACACCAACTAATAATAATACTGCTACTCTACCGCCAGCAGCTTCTTCTCTTCCCAGCCGCATGATGATGAAGGAAACTGCTTCTTGCCCCACTTCTTCATTGCCAACTCCCAATGACCAGCCTGCCAGGGTTGAGGTTGGGTTGCGTGAAGGAAGAGGAGTAAATATCCATATGTTTTGTGATCAGAAGCCTGGTCTGTTGCTCTCAACACTCACCACTTTGGACAACCTTGGGTTAGATATCCAGCAGGCTGTTATCAGTTTCTTCAATGGCTTTGCTATGGACATTTTTCGAGCTGAGCAATGCAATGAAGGTCAGGATCTCCACCCAGATCAAATCAAAGCAGCACTCATTGAAGCATCTGAAGCATCCGGCTTCCATAACATCATTTAG 1716 0.4213 MSSTNSTCLMEERELSDANNTYQLVPIPIMPPPQVVNEDWYMPNNNNNNNNTVTTIQNQPPDSDSDTRDMNFFHQDNNNSNSFFHPSSFPSSMSFITNLHYPHQATPKPMFSSLLSGMMIPSNTTNNPLFDQNGGNNNSCQQVMGFLEPQAFATSPSNADATLLGGLGFPTSLNNSSSDPNNNSLSATMSCVIPQEHEEEDKPPNKFALFEGFHNNIENNTGSSAVAASSSSWMMNNKYSNILMRPLESLPPSSGAQPTLFQKRAAQHRKINVTDERGKGKLDEEEQQGNNNNEEEKRKLEMEDTGDGSLLNSYDDYSDHDMVEDMKMESESSSKNKNIIGENNNKNSNNNLNLQKGNNNKKKTGMPAKNLMAERRRRKKLNDRLYMLRSVVPNISKMDRASILGDAIEYMKELLQKINDLHNELQSMPPTAPASSLHHPLTPTNNNTATLPPAASSLPSRMMMKETASCPTSSLPTPNDQPARVEVGLREGRGVNIHMFCDQKPGLLLSTLTTLDNLGLDIQQAVISFFNGFAMDIFRAEQCNEGQDLHPDQIKAALIEASEASGFHNII* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2599 571 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 365 414 IPR011598 GO:0046983
Ahy3g2599 571 PANTHER BHLH TRANSCRIPTIONAL FACTOR 122 565 - -
Ahy3g2599 571 CDD bHLH_AtAMS_like 368 432 - -
Ahy3g2599 571 MobiDBLite consensus disorder prediction 262 365 - -
Ahy3g2599 571 Pfam Helix-loop-helix DNA-binding domain 372 414 IPR011598 GO:0046983
Ahy3g2599 571 MobiDBLite consensus disorder prediction 425 455 - -
Ahy3g2599 571 MobiDBLite consensus disorder prediction 268 305 - -
Ahy3g2599 571 MobiDBLite consensus disorder prediction 425 456 - -
Ahy3g2599 571 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 122 565 - -
Ahy3g2599 571 SMART finulus 371 420 IPR011598 GO:0046983
Ahy3g2599 571 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 368 437 IPR036638 GO:0046983
Ahy3g2599 571 MobiDBLite consensus disorder prediction 317 332 - -
Ahy3g2599 571 MobiDBLite consensus disorder prediction 333 365 - -
Ahy3g2599 571 Gene3D - 356 429 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2599 Ahy-Chr3 116242220 116246511 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2599 243 541 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 51.495 8.34e-79 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy3g2599 HLH 1.70E-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2599 - - ahf:112732910 915.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2938 13 118548949 118554133 Ahy3g2599 3 116242220 116246511 hybridization
Ahy3g2599 3 116242220 116246511 Ahy18g2912 18 133991325 133996550 PCT
Ahy3g2599 3 116242220 116246511 Ahy8g2667 8 50007980 50012753 PCT
Ahy18g2912 18 133991325 133996550 Ahy3g2599 3 116242220 116246511 PCT
Ahy8g2667 8 50007980 50012753 Ahy3g2599 3 116242220 116246511 PCT