Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2588 ATGGAAGCTTTTTCTACTTTTCCTTCTTCTTCTTACCATAATCACTACCCAATTCTTCTTGACTCGTCATCACTCTTCATCCCCAATAACACTACTACTACTACCCCTCCTCCAATAAAGCTTTATTCTTCTCTTCATCATGATCATCATATGATCAACACTACTGCTGATACTACTAGTCCCCATTATCCTCTTATTCCACCACCTAATCACCAACTCTTTCAACTTCATAATAGTAATCAGCAGGAAACATCTTCTTTGGATACTAGCTCTGTTGATCAAAGCTCCAAGGTTGTTGCTGCTACCACCAAAAGTTACAACAGTAGTGCTGATCCTTCTCCTCCTTTTCTCTCACATAACCACAGCCCTGAGTCCTCTGTGGTTGAAAACGGTGACCAAGTCACTCAGAACACTCCTCCTCCTATTAACATGGCGGACAACAAGCGGAAAACTACCTCTAACTCCTCTTCCTTCAACAACAATAAGGAGTTGTCAGCAGGTAGAGAAGGGAGAAGTAGCAAGAAACAAAGGAAGAGTAATAATGGTGGGAGTGGGGTGAAGAAGGGAGAGGAGAAGGAAAAAGAAGAGGCTCCAACAGCAACAGGGTATATCCACGTTAGAGCAAGAAGGGGCCAAGCAACTGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGGGAGAAGATAAGTGAGAGGATGAAGATGTTGCAACGACTTGTGCCAGGCTGTGATAAGGTAACCGGAAAGGCCCTTGTGTTGGACGAGATCATCAATTATGTTCAGTCCCTACAAAATCAAGTAGAGTTCTTGTCAATGAAGCTTGCTTCAGTCAGCCCCTTCTTCTTTGACTTTGCAATGGACCTAGATAATGATAACAATAATGGCCACTTGGTTAGACCACTGGATCAGAACGTTCAGAATCAGAAGATAAGCAGCATAGGATCAACACCAGCACTGGCATCAGTACCACAATGCAGCACAAACCAGGTTACACCCTTTGCTGATACAACCACCATGACCACTACCACCGGTACCACCACCTTTCCCGGTGCTAATAATAATAACAGTGACTATCTTTTGGATTATTCATCAACATCACCAGTTTTCCTACAAGGACAGAGGTCATCAAATGTCTTCTCTGAGTATACCGGTGGTCAATTCTGGGAAGTAGAAGAAGACCAACGACAAAAGCAGCTTCTTCATCCATATGGACTTGGCAGCAACTTAGGTTCCTTGAATTAA 1239 0.435 MEAFSTFPSSSYHNHYPILLDSSSLFIPNNTTTTTPPPIKLYSSLHHDHHMINTTADTTSPHYPLIPPPNHQLFQLHNSNQQETSSLDTSSVDQSSKVVAATTKSYNSSADPSPPFLSHNHSPESSVVENGDQVTQNTPPPINMADNKRKTTSNSSSFNNNKELSAGREGRSSKKQRKSNNGGSGVKKGEEKEKEEAPTATGYIHVRARRGQATDSHSLAERVRREKISERMKMLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLASVSPFFFDFAMDLDNDNNNGHLVRPLDQNVQNQKISSIGSTPALASVPQCSTNQVTPFADTTTMTTTTGTTTFPGANNNNSDYLLDYSSTSPVFLQGQRSSNVFSEYTGGQFWEVEEDQRQKQLLHPYGLGSNLGSLN* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2588 412 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 212 262 IPR011598 GO:0046983
Ahy3g2588 412 MobiDBLite consensus disorder prediction 80 220 - -
Ahy3g2588 412 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 67 412 IPR024097 GO:0006355
Ahy3g2588 412 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 67 412 - -
Ahy3g2588 412 SMART finulus 218 268 IPR011598 GO:0046983
Ahy3g2588 412 MobiDBLite consensus disorder prediction 80 166 - -
Ahy3g2588 412 CDD bHLH_AtBPE_like 202 287 - -
Ahy3g2588 412 MobiDBLite consensus disorder prediction 184 200 - -
Ahy3g2588 412 Gene3D - 209 277 IPR036638 GO:0046983
Ahy3g2588 412 Pfam Helix-loop-helix DNA-binding domain 216 263 IPR011598 GO:0046983
Ahy3g2588 412 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 210 277 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2588 Ahy-Chr3 115771471 115774442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2588 132 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 60.510 9.19e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy3g2588 HLH 1.30E-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2588 - - ahf:112732895 735.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2927 13 117852620 117855616 Ahy3g2588 3 115771471 115774442 hybridization