Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2555 ATGAAGACACACAATTTCTTGAAGTCCTTTCATTTTACTTTGGTTAACTCTCTTCTCTTTTTTCCATGCAATTTGAGAGCAGAGAAGAGTGAAGCAAACAATAGAGGAAGTGGAAGCATTCATTTAGCTATGGATTGGAATTTGAAAGCACCACCGTCTTGGGATTTGACAGAAGTGGATGAGGCAACCTTACCAAACATAGAAACAGTGGATGGCTCAACCAGATTTGGTGTTTACAGAACAAAAGAAGGGGAATTCTCTGTTGACTTGAAACTTGGCCAGGTTGGGAATTCTGCAACCGAACCAGTGTTGGTGACTAATTCAAATAAGTCCAACAAAGATGCTGTTGCTGCTGGTGTTGGTGTTGGTGTTGGTGTTGGGGTGTCCAACTCCAAAATGGTAATGCAATCACCTTCCTCAGGGTCATCAAAGAGAGCTAGAGCCATTAACAATGGGACACAGACAGTGTCATGCCTCGTTGATGGGTGCAATTCAGATCTCAGCACTTGCAGAGACTATCACAGGCGCCATAAGGTCTGCGAACTCCATTCCAAGACTGCTCAGGTCACAATTGCTGGCCACAAACAAAGGTTCTGCCAACAGTGTAGCAGGTTTCATTCACTGGAGGAGTTTGATGAAGGAAAGAGAAGCTGCAGAAAACGCTTAGATGGACACAACCGAAGGAGGAGAAAGCCACAACCAGAACCAATCACAAGAGGTGGTAGTTTTTTGTCCAGTTTCCAAGGCAGCCAGTTGCTACCCTTCTCAGGTTCGCATGTGTTCCCCTCATCTGGCGTGGTGAATGCTGGGTGGAGTGCAGGACTTGTTACATCCTGCGGAGATGTCAGGCTCCACAGCCACAGCAGCCAGCAACAGCAACAGATGCACATGGTTGATAAACAAGACCTGTTCCTTGGATCCTCACCAACACCCTACAATAACAACAAAGAAGGGAAGCAACAACTTGCATTCTTACAAGTTGATAACCATCACCACCATCATGCTGGTGCTGCTTCTTCCATGTGCCTGAGGAACATGTTCTGTGATAACACCCTAACAAGCTCGGTTCATGACTCTTCCTGTGCTCTCTCTCTTCTGTCATCACCACAGACAACACACAATCCTGGGAATGGATTGAACCAACTGGTGCCGCAGCCTCACACTCATCATACTCATCACTCTTCCCTGATGCAACAATCCTTAGGCCTCAGCCTCCACGATAGCAGCAGCATGGAGTCGGTGGACCCGGTTATGGGCCACAGTGAGACTGAACATTGTTCCTCAATGTATAATATGGATTCTCATGGATCCCATGGGAGTGATCCCCCTCAACTATTCCCCTTTCAGTGGGAATAA 1356 0.4676 MKTHNFLKSFHFTLVNSLLFFPCNLRAEKSEANNRGSGSIHLAMDWNLKAPPSWDLTEVDEATLPNIETVDGSTRFGVYRTKEGEFSVDLKLGQVGNSATEPVLVTNSNKSNKDAVAAGVGVGVGVGVSNSKMVMQSPSSGSSKRARAINNGTQTVSCLVDGCNSDLSTCRDYHRRHKVCELHSKTAQVTIAGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPITRGGSFLSSFQGSQLLPFSGSHVFPSSGVVNAGWSAGLVTSCGDVRLHSHSSQQQQQMHMVDKQDLFLGSSPTPYNNNKEGKQQLAFLQVDNHHHHHAGAASSMCLRNMFCDNTLTSSVHDSSCALSLLSSPQTTHNPGNGLNQLVPQPHTHHTHHSSLMQQSLGLSLHDSSSMESVDPVMGHSETEHCSSMYNMDSHGSHGSDPPQLFPFQWE* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2555 451 MobiDBLite consensus disorder prediction 431 451 - -
Ahy3g2555 451 Pfam SBP domain 158 231 IPR004333 GO:0003677
Ahy3g2555 451 MobiDBLite consensus disorder prediction 222 242 - -
Ahy3g2555 451 MobiDBLite consensus disorder prediction 369 400 - -
Ahy3g2555 451 ProSiteProfiles Zinc finger SBP-type profile. 155 232 IPR004333 GO:0003677
Ahy3g2555 451 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 53 451 - -
Ahy3g2555 451 Gene3D - 149 219 IPR036893 GO:0003677|GO:0005634
Ahy3g2555 451 SUPERFAMILY SBT domain 156 237 IPR036893 GO:0003677|GO:0005634
Ahy3g2555 451 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 53 451 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2555 Ahy-Chr3 113289327 113293018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2555 44 451 SBP-box Gene Family AT5G50670 40.515 1.20e-73 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ahy3g2555 SBP 6.20E-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2555 - - ahf:112790946 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2897 13 115933754 115937615 Ahy3g2555 3 113289327 113293018 hybridization