Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2500 ATGGAAAACAGGGAGGAAGATGTGAAGGTAGGAGCAAGCAAGTTCAGAGAGAGGCAGGCAATAGGGACAGCAGCACAAACAGAGAGAGACTACAAGGAGGCACCAGCAGCACCATTGTTTGAGGCAGGTGAGCTCAAGTCATGGTCGTTCTACAGAGCAGGCATTGCTGAGTTTGTGGCCACTTTCTTGTTCCTCTACATCACGGTCTTGACTGTAATGGGTGTCAAGAGGGAGCCCTCCATGTGCTCCTCTGTTGGAATCCAGGGTATTGCTTGGGCCTTTGGTGGCATGATCTTCGCCCTTGTCTACTGCACTGCTGGAATCTCAGGTGGACACATAAACCCAGCAGTCACCTTTGGACTCTTTTTGGCAAGGAAGTTGTCCCTCACAAGGGCAATATTCTACATAGTCATGCAGTGTCTTGGAGCTATATGTGGTGCTGGTGTAGTGAAGGGATTTGAGGGTAATGCTCGCTATGAGATGTTAGGAGGAGGAGCCAATGTGGTCAACCATGGTTACACCAAGGGTGATGGCCTTGGAGCTGAGATTGTTGGCACCTTCGTCCTTGTCTACACCGTTTTCTCTGCTACTGATGCCAAGAGAAACGCTAGGGACTCTCATGTCCCTGTTTTGGCCCCTCTTCCCATTGGCTTTGCTGTGTTCTTGGTCCACTTGGCTACCATTCCCATCACAGGAACTGGCATTAACCCAGCAAGGAGTCTCGGAGCTGCCATCATCTTCAACAGGGACAACGCATGGGATGACCATTGGGTTTTCTGGGTTGGACCTTTCATAGGAGCTGCTCTTGCTGCCATCTATCACCAGATAGTGATCCGAGCCATTCCGTTCAAGACAAGGGCTTAA 864 0.5046 MENREEDVKVGASKFRERQAIGTAAQTERDYKEAPAAPLFEAGELKSWSFYRAGIAEFVATFLFLYITVLTVMGVKREPSMCSSVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFEGNARYEMLGGGANVVNHGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPVLAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNRDNAWDDHWVFWVGPFIGAALAAIYHQIVIRAIPFKTRA* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2500 287 Pfam Major intrinsic protein 44 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy3g2500 287 ProSitePatterns MIP family signature. 112 120 IPR022357 -
Ahy3g2500 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 286 IPR034294 -
Ahy3g2500 287 TIGRFAM MIP: MIP family channel proteins 56 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy3g2500 287 PANTHER AQUAPORIN PIP1-2 1 286 - -
Ahy3g2500 287 SUPERFAMILY Aquaporin-like 44 279 IPR023271 -
Ahy3g2500 287 CDD MIP 52 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy3g2500 287 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy3g2500 287 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy3g2500 287 PRINTS Major intrinsic protein family signature 257 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy3g2500 287 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy3g2500 287 PRINTS Major intrinsic protein family signature 181 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy3g2500 287 PRINTS Major intrinsic protein family signature 217 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ahy3g2500 287 Gene3D Glycerol uptake facilitator protein. 37 285 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2500 Ahy-Chr3 109601323 109602687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2500 1 286 Major Intrinsic Protein MIP AT4G23400 87.108 3.77e-180 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2500 K09872 - gmx:100796833 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2828 13 112553345 112554703 Ahy3g2500 3 109601323 109602687 hybridization