Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2488 ATGGCAGGATGGTCAACTTGGTCAAATGGGTCGTCCTTAGATTTCAATGAAGTTGAGATATTTGATGTATCTAATGGTAATGACTGTAGGAATCTAAACGATCACACTGATAATGATGACCATGACAAAGTTAAAACCTTGTTTGATGAAGTTTTTCCGGTTTATCTAAAGGAGAGTTGTTCTCGTGGCATTGTTCGGCCTATGCCGGTTTTGCTGGGCGATGGACAAGCAGTGGATTTGTACAAACTCTTCTCTCTTGTGAAGGAAATAGGTGGATATGATTTTGTGTCGAGAAAAGGATTGTGGGGTTATGTGTCAAAGGAACTGGGTTTGAACCACCTAGTTTTGGCATCAATGAAATTAATTTTTGTTAAGTATCTGAATGAGTTTGAAGAATGGCTCAGGAAGACTTTCAAAGAGAAGAGTTTCAGAAACGAAAATCTTGGGTGTGATTGGGGTTTTAAGTCATTGCCGTTAGAGCTAGAGAAAGAATTGAGAGGCCTATTATCTCTAAACGTAAAGGATAAAGATGACGGGCTTGCGAAGATGGAATCAAATGGAATAAAAGAATATATTGATTTGGTTAACCACAAGGAAGATCCAAATGTATTGGACACCAAAACTCAGAAAATAAATACATCTGAGGATGTCCAACACTCCCATGTTGATGATGACGAAAAAGCTTGTAATGGTGTTAAGGAATACTCTGTCACCTTGAACGCGCCAATTGCTGAGAATGGAGTTGGCTCTCGCAAGCGCAAACGGGAACCATTATCTGGAATGCTGAACTGGGTTAGGCAAGTTGCAAAGCATCCCTTTGTTCCTTTACAGCAACCATTACCAAAACCATCAAAGTGGAAGGAGTATAAAGGCAATGACTTTTTCATCCAGTTACTGAGGGCAAGAGAGGCTCGGTTGGTGAAACCATGCGCACAACCTAACAATGAAACACCTTCTTCACAGAAGCAGAAGATGTGCCCTGATATGTACGAGGATCACGTTGCACCTCGTTACCATTCTTCTCCAAGACTGAGATGTAGTGAAAGGCTGCCAGCACATGTTAAATCTCGCACATGCTCTTGTTGCAATTCAGGTTCTGCCAATGGGAAAAAATTAACAAGTTCAGTCAATACGGAGGCCGAAAATTGTTTCTTGCATAAAACAACTGCAACAGTAGATTCATCGACTGCAAGGACAGTGATTGAACAGTCTGCAAATGATTTCCAGGAAAAGCAAGTTTCTGTGGGTCCTCTTTATCAAGCAGATGTCCCAGAATGGACAGGTGAAGTTTGTGAGAGTGACTCAAAGTGGTTAGGCACTCGAGTATGGCCTCAGAAACATGACTTAGATCTTCCAAGTGAAACAGATCTTGTAGGGAGAGGAAGACAAGGCAATTGTGAGTGCCATTTTGAAGGTTCTGTTGAGTGTGTTAGATTTCATATTGCTGAAAGAAGGATGAAATTGAGGCGTGACCTGGGTTCTGCATTTTATCATTGGGGGTTCGATCGCATGGGTGAGGAAATTTCACTTCAATGGACAATTGAAGATGAAAAGAGATTCAAGGATTTGATGAGTCAGAGTTTTCCATCTCAAAACAAGTGTTTCTGGAGCAACAAATCAAGATACTTTCCAGACAAGACAAGAAGGGACTTGGTGAGTTATTACTTCAATATGTATCTTATTCAACTAAGAAGCTATCAGAACCGTGTGACTCCAAATAGTGTTGATAGTGATGAAGATGAAGTGGAGTTCGGATCTTTTAGCGAAGGTTTTGGGATGGGAGCTCTCAAAATCCCAGGTTCCAATTTCCTGGAGTGTTCACTGAATAAGCAATGCACTGATTTAGATTAA 1851 0.4084 MAGWSTWSNGSSLDFNEVEIFDVSNGNDCRNLNDHTDNDDHDKVKTLFDEVFPVYLKESCSRGIVRPMPVLLGDGQAVDLYKLFSLVKEIGGYDFVSRKGLWGYVSKELGLNHLVLASMKLIFVKYLNEFEEWLRKTFKEKSFRNENLGCDWGFKSLPLELEKELRGLLSLNVKDKDDGLAKMESNGIKEYIDLVNHKEDPNVLDTKTQKINTSEDVQHSHVDDDEKACNGVKEYSVTLNAPIAENGVGSRKRKREPLSGMLNWVRQVAKHPFVPLQQPLPKPSKWKEYKGNDFFIQLLRAREARLVKPCAQPNNETPSSQKQKMCPDMYEDHVAPRYHSSPRLRCSERLPAHVKSRTCSCCNSGSANGKKLTSSVNTEAENCFLHKTTATVDSSTARTVIEQSANDFQEKQVSVGPLYQADVPEWTGEVCESDSKWLGTRVWPQKHDLDLPSETDLVGRGRQGNCECHFEGSVECVRFHIAERRMKLRRDLGSAFYHWGFDRMGEEISLQWTIEDEKRFKDLMSQSFPSQNKCFWSNKSRYFPDKTRRDLVSYYFNMYLIQLRSYQNRVTPNSVDSDEDEVEFGSFSEGFGMGALKIPGSNFLECSLNKQCTDLD* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2488 616 SUPERFAMILY ARID-like 47 136 IPR036431 GO:0003677
Ahy3g2488 616 SMART bright_3 43 136 IPR001606 GO:0003677
Ahy3g2488 616 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 616 - -
Ahy3g2488 616 SMART ARID_2 39 131 - -
Ahy3g2488 616 CDD ARID 45 131 - -
Ahy3g2488 616 Gene3D - 31 148 IPR036431 GO:0003677
Ahy3g2488 616 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 616 - -
Ahy3g2488 616 ProSiteProfiles ARID domain profile. 42 135 IPR001606 GO:0003677
Ahy3g2488 616 Pfam ARID/BRIGHT DNA binding domain 56 131 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2488 Ahy-Chr3 108728226 108732480 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Ahy3g2488 ARID 2.40E-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2488 - - gmx:100819320 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2815 13 111389651 111393905 Ahy3g2488 3 108728226 108732480 hybridization