Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2485 ATGTCTTCTGGTCTGTATTCATTTGAAACCACTTTCCAAGCACATTCAAGCTCAGACATGGTCACTGCTGATGGAGGAGACCTTGCTTTTCTCACTGACCCTTTTCCTTTCTTCGAAAACAGCACTACTAATAATGATATTGGTCAACACTGTTCGAGCAACCAAAGCATGTTCGATGAGGCTCTTTCTTCTTCTTCTGTTGACCCTTTTTCATCTTGCTTCTTTTCTTTCTCTCCTCCAAGTATTCACTTAGAAAACCTTAGCCTTCAGACCAACAACAAGAACAACCGTGTTGATCCCAATTTGGAGAGTGACTTTGCAAGTTTCTCATCGGGTTTTGATGTGACACAAGTAGTGAAGAGTGAGGAGTGCCAAATCGGTGTTGAATTTGATTATGGATATAATAATCATAATCACCAACACTTTTTTCCCCACAGTTATAGCGGTGCTGAGAATGTGGCAAAATACATGCAGAGGAGTTTCAGCAGCAACTCCTTTCATGGCAAACCTGGCAATTTTCTGTTCCAAAATAATCACTCTGACACACTGAACAACAACAATAATAATAACAACATGAAATCTCCAAGTTTTCAAAGGCATGATATGAATTCACCTGAAAACAGTGCCTTCAATGGACAAATGAGGAGGGTGTGCAGCACTGGAGATTTGCAGAAGTGTCAAAGGGAAGGATCATTGTTGGAGGAACCGAATTTCAAAGTAGGGCGTTATAGTGCCGAAGAAAGAAAAGAAAGAATATCAAAATATAGAGCCAAGAGAAGCCAGAGGAACTTCAACAAAACCATCAAGTATGCATGCCGAAAAACACTAGCCGACAATCGACCGCGCATACGTGGCAGATTCGCACGCAACGACGAGGAGCGCGACATTATTCCTATTCCAAATCACAAGGCTCCATGTTCAGCCCGAGATGATGAAGACGAAGAAGTCGATTTCTGGATTGAAGGGTTGCGGTTGCATGAAGAGCAGGAGGATGTAACAGTCAACGCTTATGGACCTAATCAGTTTCAGTACTTTCGTTTCTAA 1044 0.4195 MSSGLYSFETTFQAHSSSDMVTADGGDLAFLTDPFPFFENSTTNNDIGQHCSSNQSMFDEALSSSSVDPFSSCFFSFSPPSIHLENLSLQTNNKNNRVDPNLESDFASFSSGFDVTQVVKSEECQIGVEFDYGYNNHNHQHFFPHSYSGAENVAKYMQRSFSSNSFHGKPGNFLFQNNHSDTLNNNNNNNNMKSPSFQRHDMNSPENSAFNGQMRRVCSTGDLQKCQREGSLLEEPNFKVGRYSAEERKERISKYRAKRSQRNFNKTIKYACRKTLADNRPRIRGRFARNDEERDIIPIPNHKAPCSARDDEDEEVDFWIEGLRLHEEQEDVTVNAYGPNQFQYFRF* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2485 347 PANTHER CCT MOTIF FAMILY PROTEIN 24 344 - -
Ahy3g2485 347 ProSiteProfiles CCT domain profile. 248 290 IPR010402 GO:0005515
Ahy3g2485 347 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 24 344 IPR045281 GO:0009909
Ahy3g2485 347 Pfam CCT motif 248 290 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2485 Ahy-Chr3 108502857 108504817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2485 244 292 C2C2-CO-like Transcription Factor Family AT5G57660 53.061 1.58e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ahy3g2485 CCT 9.20E-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2485 - - adu:107479916 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2811 13 111038079 111040299 Ahy3g2485 3 108502857 108504817 hybridization
Ahy5g1581 5 41804401 41806341 Ahy3g2485 3 108502857 108504817 PCT