Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2478 ATGATTTACAAGTTCAAACAACTTCTCTCCGAGGGTCAAGTATATGTAATGAAGCTCTTCTCTGTTGTGCCAAACCAAGGATCTTATAGGGCCACTAGGCATCAATTTAAGTTGATTTTCCAGTTCAGGACCACTGTTAGGGATGCTATCTGCGATTTTATTCCAAAATCCGCTCTTACAATCTCTCCATTCATTGAACTTTTGGAAACCAAAGAGGATTCTGATTTCTTAGTTGATATGGTGGGTCTGTTGGTCTCTGTGTCGGAAGAGAAAGAATATGATAAAGATGGAAAGAAGATGAAGATGGCTGTGATGGAACTTGCTGAAAATGATCACAGGATTCGGTGTGCCTTATTTGGTGAATATGTTGACGAACTTAATCGATTTCTGTCTTCTGGGTATGCTGAACAGCCAATTGTGGTTTTACATCTTGCCAAAGTTAAGTTTTTTAGAGGTAGAGTTGGACTTCAGAATGTTATGTTTGCATCGAAGCTTGGATTTAATCTTGACATCCCAGAGGTGGCAGCTTTTCGGAAAAGTTCTATTCCTCATGGAGTTAGTGCATCCCAACCCATTGGCATTGTTGGATCTGGAAAAAATATTGGAATAGAAGAAGATTTTATGAAGCTCATACCTAGGTGTACTGTGAAGTCGCTTGATGATAACAATCGGGCTGGAATCTTTGTTGTACTAGCGAAGATAGCTGAAATAGTTGAAGATGGTCCTTGGTGGTACTCTGCTTGTGTGTGTGGCAGAGGTGTTCAGGCAGAATCTGGGATATATTTTTGTCAATTTTGCAACATCCATGTTACAAATGTGACTCCTAGGTTTAGAGTAAAGGTGTTAGTTGAGGATTCCACTGGTGTTTCTATTTTTGTCCTCTTTGATCGTGAGGCAAGTTACCTACTGAATAAGACTTGTGCCCAGCTGTTTGAATAA 939 0.3983 MIYKFKQLLSEGQVYVMKLFSVVPNQGSYRATRHQFKLIFQFRTTVRDAICDFIPKSALTISPFIELLETKEDSDFLVDMVGLLVSVSEEKEYDKDGKKMKMAVMELAENDHRIRCALFGEYVDELNRFLSSGYAEQPIVVLHLAKVKFFRGRVGLQNVMFASKLGFNLDIPEVAAFRKSSIPHGVSASQPIGIVGSGKNIGIEEDFMKLIPRCTVKSLDDNNRAGIFVVLAKIAEIVEDGPWWYSACVCGRGVQAESGIYFCQFCNIHVTNVTPRFRVKVLVEDSTGVSIFVLFDREASYLLNKTCAQLFE* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2478 312 SUPERFAMILY Nucleic acid-binding proteins 73 180 IPR012340 -
Ahy3g2478 312 CDD RPA1_DBD_B_like 79 180 - -
Ahy3g2478 312 Pfam Replication factor-A C terminal domain 228 310 IPR013955 -
Ahy3g2478 312 Pfam Domain of unknown function DUF223 2 49 IPR003871 -
Ahy3g2478 312 Gene3D - 1 49 IPR012340 -
Ahy3g2478 312 CDD RPA1_DBD_C 228 312 IPR013955 -
Ahy3g2478 312 SUPERFAMILY Nucleic acid-binding proteins 218 312 IPR012340 -
Ahy3g2478 312 CDD RPA1_DBD_A_like 2 46 - -
Ahy3g2478 312 Gene3D - 195 312 IPR012340 -
Ahy3g2478 312 PANTHER REPLICATION FACTOR A 1, RFA1 24 310 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy3g2478 312 Gene3D - 54 187 IPR012340 -
Ahy3g2478 312 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 24 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2478 Ahy-Chr3 108431651 108442278 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2478 4 310 Core DNA Replication Machinery Family AT5G08020 22.500 1.79e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2478 - - adu:107479909 610.527