Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2474 ATGGTTTCATCATCAAGTGGTGGATTCTGCTACACCTACAGCGATAATCCTGGAGGAGGAGGAGGAAGCGGCTTTGTATCTGACCCAGAGATGGAGATGAAATGGAAAACCTTGTTCGCCAACAACGAACCACCACCTCCTACTTGTTTTGATCTAATACTCCAAAACACGCCAAGCCAAGGCCTTTCACTATCTCTTAGCTCAAACAACCCTTCTTCTATTTCTCTCCAATCTTTTCCCCTAAGACAACAACACCATGAGATGGCGCTGCAAGGCCATTACTCGCTCAAGGCGTCCAGGTTCTTGCTACCGGCACAGCAACTCCTCAACGAGTTCTGTAGCCTAGGAACCAAGCAACTCAATAATCAACTCATCAAGCGTAACAAGAACAACACCAACCCCCCACCTCTTACCTCTCTAGACTTGGTTGAATTGCACAAGAGAAAGGCTAAGCTCCTTGTCATGCTCCAAGAGGTGGACACAAGATACGAGCACTACTGTAATCAGATGAAGGGAGTGGTGGCGTCATTTGAGGCCATGGCCGGGGAGGGAGCGGCCACCGTGTACTCGGCACTTGCGCTGAAGGCCATGTCACGCCACTTCAGATGCTTGAAGGATGGGATACTGGAACAGATAGAGGCCACTCGGAAGGGGATGGGAGAGAAGGATCCAATTGCACCGGGCACCACTAAGGGCCAAACCCCCAGGCTTAGAATCATTGACCAGGCTTTGAGACAGCAAAGGGCTTTTCACCAAACCATCTCCATGGAATCTCATCCCTGGAGACCCCAACGTGGCCTTCCTGAACGTTCCGTTTCTCTTCTCCGCGCTTGGCTTTTCGAGCATTTTCTTCACCCGTACCCAAGTGATGTTGATAAACATATTTTAGCACGCCAAACTGGTCTCTCTAGAAGCCAGGTTTCAAATTGGTTTATCAATGCAAGGGTGAGGCTATGGAAGCCAATGGTGGAGGAAATGTACTTGGAAGAAGAGAAGGAGGCTGCTGCAGCATCCTCGGAGGGAGGAGGAGGCAGCAACACTGAAGATTTTCAAAACCTATCTCCAAATTCAGCAGCAGCAAGACCAGAGGATCAGAAGCCTCGCCTACTTCGAATCGATTCGGAATGCATGTCCTCAATCATCAACAACAACTCTGATCATCGCAAAGATAACCATGAGCAGATGAATCAACAAGAGGAGGAACAGTACTTAGGGCGAGGTGTCGCAGACACGTTTGGATCAGTGGAGATTGATTTCTCATCATATCCTGAGGGCTTCAATAGCAGTGGAGGAGGTGCGGTTTCTTTGACGCTAGGGTTACAGCAACACGGTGGAAATGGGGTGAGCTTGGCTTTCCCGCCAGAAACTCATCATCAGCATCAGGCCTCCATGTTCTACTCATCAAGGGACCAGATTATTGAAGACTGTAGTCAACCAGTTCAGTACTCTCTTTTGGATGGCGAAGCACACGCCATGCCCTACAGGAATTTGATGGGGACCCAGTTGCTTCATGACTTGGCCGGATAG 1527 0.4944 MVSSSSGGFCYTYSDNPGGGGGSGFVSDPEMEMKWKTLFANNEPPPPTCFDLILQNTPSQGLSLSLSSNNPSSISLQSFPLRQQHHEMALQGHYSLKASRFLLPAQQLLNEFCSLGTKQLNNQLIKRNKNNTNPPPLTSLDLVELHKRKAKLLVMLQEVDTRYEHYCNQMKGVVASFEAMAGEGAATVYSALALKAMSRHFRCLKDGILEQIEATRKGMGEKDPIAPGTTKGQTPRLRIIDQALRQQRAFHQTISMESHPWRPQRGLPERSVSLLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEEEKEAAAASSEGGGGSNTEDFQNLSPNSAAARPEDQKPRLLRIDSECMSSIINNNSDHRKDNHEQMNQQEEEQYLGRGVADTFGSVEIDFSSYPEGFNSSGGGAVSLTLGLQQHGGNGVSLAFPPETHHQHQASMFYSSRDQIIEDCSQPVQYSLLDGEAHAMPYRNLMGTQLLHDLAG* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2474 508 CDD homeodomain 261 322 IPR001356 GO:0003677
Ahy3g2474 508 Pfam Homeobox KN domain 278 317 IPR008422 GO:0003677|GO:0006355
Ahy3g2474 508 ProSiteProfiles 'Homeobox' domain profile. 258 321 IPR001356 GO:0003677
Ahy3g2474 508 Coils Coil 382 402 - -
Ahy3g2474 508 MobiDBLite consensus disorder prediction 333 368 - -
Ahy3g2474 508 Pfam Associated with HOX 96 208 IPR006563 -
Ahy3g2474 508 SMART HOX_1 261 325 IPR001356 GO:0003677
Ahy3g2474 508 MobiDBLite consensus disorder prediction 340 359 - -
Ahy3g2474 508 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 43 458 - -
Ahy3g2474 508 SUPERFAMILY Homeodomain-like 262 327 IPR009057 -
Ahy3g2474 508 Gene3D - 264 326 - -
Ahy3g2474 508 SMART prehox3 90 210 IPR006563 -
Ahy3g2474 508 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 43 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2474 Ahy-Chr3 108328177 108331519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2474 40 507 Homeobox Transcription Factor Family AT5G41410 43.636 9.70e-120 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Ahy3g2474 POX 7.90E-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2474 - - adu:107479887 973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2804 13 110703618 110706904 Ahy3g2474 3 108328177 108331519 hybridization
Ahy5g1577 5 41707406 41711271 Ahy3g2474 3 108328177 108331519 PCT