Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2418 ATGGCTGCAACTACTGCTTTTTCTTGTTCTGCTTCTTCTTCTTCTTCTATGAAGCACACTACTCAGCACCTCAACCGAACCAAACTCCTCATGGAACAACAACACCCAACCAAGCATCCATATCCTAAACTCATACGAATACGCGTCACCGACGCCGACGCCACCGATTCCTCCAGCGACGACGAACCACCTACCCACTCCTCCACACGCCGCCGAGTCAAGAACTTCGTCAACGAGATCACCATTGCCCCCTCCGCCCAAGAAGCCACCGATACACTCGCTTCCAACAAGAGAAAGAAGAAGGCCAAGTCTACAGCTGCCATCGCAGCTCCGCCCAGCCGCCGGCGTCAGTCAAAGGCCTTCTCCGGGAAGAAGTTCCGGGGAGTGAGGCAGAGACCATGGGGGAAGTGGGCTGCTGAGATAAGAGACCCTTCTCGCCGCGTTAGGTTGTGGCTGGGAACCTACGACACCGCCGAGGAAGCTGCCATGGTGTACGACAACGCTGCCATTCAGCTTCGCGGCGCCGACGCTCTCACGAACTTCATCATTCCGCCGGCGCAGTGCTCGGCGGAGGATAACAATTCCAGCGAAGAAGAATGCACTCCAATCAGCAACAAGAAGGAGAAGAACATGTTGTCTCCCACTTCGGTTCTTCTTCGATGTTGTTCGGAAGAAACAGAATGCGCAACCGCCACCAGTGAAGAATATGAGTATCAGAGCGAGTCAATGTTTCCGATTCCGAACGATTCACTCTTTGATTTCCAAACAGAGGAGATTTTCAGCGATGATTTTTCAAGTGTGTTTTTGAGCTCGATTGACGAGACTCTTTTGGATTTCGGTTTCAAGAGTAGTAGTCCTTGGTACACAGATTATGATGACACTTTCCAAGAGATTGCGGATTTCTTTGTCTCCGATCCTCTTGTGGCTCTCTGA 933 0.5166 MAATTAFSCSASSSSSMKHTTQHLNRTKLLMEQQHPTKHPYPKLIRIRVTDADATDSSSDDEPPTHSSTRRRVKNFVNEITIAPSAQEATDTLASNKRKKKAKSTAAIAAPPSRRRQSKAFSGKKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAAMVYDNAAIQLRGADALTNFIIPPAQCSAEDNNSSEEECTPISNKKEKNMLSPTSVLLRCCSEETECATATSEEYEYQSESMFPIPNDSLFDFQTEEIFSDDFSSVFLSSIDETLLDFGFKSSSPWYTDYDDTFQEIADFFVSDPLVAL* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2418 310 MobiDBLite consensus disorder prediction 52 73 - -
Ahy3g2418 310 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 20 306 - -
Ahy3g2418 310 SUPERFAMILY DNA-binding domain 125 182 IPR016177 GO:0003677
Ahy3g2418 310 CDD AP2 124 181 IPR001471 GO:0003700|GO:0006355
Ahy3g2418 310 MobiDBLite consensus disorder prediction 90 125 - -
Ahy3g2418 310 ProSiteProfiles AP2/ERF domain profile. 125 182 IPR001471 GO:0003700|GO:0006355
Ahy3g2418 310 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Ahy3g2418 310 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Ahy3g2418 310 Gene3D AP2/ERF domain 124 183 IPR036955 GO:0003700|GO:0006355
Ahy3g2418 310 SMART rav1_2 125 188 IPR001471 GO:0003700|GO:0006355
Ahy3g2418 310 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 20 306 - -
Ahy3g2418 310 MobiDBLite consensus disorder prediction 52 74 - -
Ahy3g2418 310 MobiDBLite consensus disorder prediction 1 22 - -
Ahy3g2418 310 Pfam AP2 domain 125 174 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2418 Ahy-Chr3 101875273 101876937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2418 17 310 AP2-EREBP Transcription Factor Family AT4G23750 39.067 5.61e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ahy3g2418 AP2 3.50E-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2418 - - ahf:112732493 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2746 13 104655575 104658501 Ahy3g2418 3 101875273 101876937 hybridization
Ahy5g1549 5 41181472 41183396 Ahy3g2418 3 101875273 101876937 PCT