Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2410 ATGGCTGACACTGCTGCAGAAGTTCCCACAAGGAGGTCAAGGAGCAAAAGGGCTCTCAAGGACAAAAACTCGTCAACAAATGAGTCCGCAAACACCATCACCACCAAGGTCTCAGAATTCACACCTCCAATTTCTGAACAAGTGATAGTGAAGGAGAACCTCGACACAACCACCACCGTTTCTCAACCCAAGAAAGGAAGAGCTGCTTCAAAGAAACAAAGCACGAAGCAGCAGCAGCAGCAATCTCCTTCTTCTTTTGAGAAAGAGTTGCTTGAGATGCAGGAGAAGCTGCAGCAGCTGCACCTCGAGAAGGAGAAAACCGAGGAGCTCTTAAAAGCCAAGGATGAGGCCCTCAAGCTCAAGGACCAAGAGCTTGAAAACCGAGGCAAGGAACAGGAGAAGCTCCAGACCGAGCTCAAGAAGCTCCAGAAGTTGAAGGAGTTCAAACCCACCATGAACTTGCCTCTTCCGAAAGATAAGGAACAAGACAAGAAGGACAAGAAGAAAAGGCCCTCTGCTCCTTACATTCTGTGGTGCAAGGATCAATGGAATGAGATCAAGAAAACAAACTCAGAGGCAGAATTCAAGGACATCTCAAACATGTTGGGGGCTAAATGGAAGACAGTTAGCGCTGAAGAGAAGAAGCCGTACGAAGAGAAGTACAATGCTGAAAAAGAAGCATATATGGAGGTAATGGCGAAGGAAAAGCGCGAGACGGAGGCACTGAAGCTGTTGGAAGAGGATCAGAAGCAGAAGATGGCGATGGAGCTTCTTGAACAATACATGCAGTTCAGACAAGAAACAGAGAAAGAGACTACAAAGAAGAACAAGAAAGAGAAGGATCCATTGAAGCCAAAGCACCCAATGTCAGCATATATCCTTTTCACAAACGATAGGCGTGCGGCTCTTGTTGCAGAGAACAAGAGCGTTGTGGAAGTTGCCAAGATCACAGGGGAAGAGTGGAAGAACATGACGGAGGAACAGAAGAGGCCTTACGAGGAGATGGCGAAGAAGAAGAAGGAGCAGTATGTTCAAGAAATGGAAGCTTATAAGCAGAGGAAACATGAAGAGGCTGCAAATCTCATGAAGGAAGAGGAGGAGCACATGAAGCTTCAGAAGCAGGAAGCGTTGCAGCTCCTCAAGAAGAAAGAGAAAACTGAAATCCTCATCAAGAAAACAAAGCAGAAGAAGAAGCAGAACAAGGAAGATAAGAATTCTGACCCAAACAGGCCTAAGAGGCCTCCATCCTCATTCCTCTTATTCAGCAAGGAAGCAAGGAAAGCTTTACAGGAGGAACGTCCAGGAATCAACATTTCCACCCTTAATGCAGTCATTTCATTGAAGTGGAAGGAACTGAGCGAGGAAGATAGACAAATGTGGAATGGGAAAGCAAGTGAAGCAATGGAAGTGTACAAGAAGGAATTGGAGGAATACAACAAAACCATTGCTTCAACTGAAGAATGA 1464 0.4577 MADTAAEVPTRRSRSKRALKDKNSSTNESANTITTKVSEFTPPISEQVIVKENLDTTTTVSQPKKGRAASKKQSTKQQQQQSPSSFEKELLEMQEKLQQLHLEKEKTEELLKAKDEALKLKDQELENRGKEQEKLQTELKKLQKLKEFKPTMNLPLPKDKEQDKKDKKKRPSAPYILWCKDQWNEIKKTNSEAEFKDISNMLGAKWKTVSAEEKKPYEEKYNAEKEAYMEVMAKEKRETEALKLLEEDQKQKMAMELLEQYMQFRQETEKETTKKNKKEKDPLKPKHPMSAYILFTNDRRAALVAENKSVVEVAKITGEEWKNMTEEQKRPYEEMAKKKKEQYVQEMEAYKQRKHEEAANLMKEEEEHMKLQKQEALQLLKKKEKTEILIKKTKQKKKQNKEDKNSDPNRPKRPPSSFLLFSKEARKALQEERPGINISTLNAVISLKWKELSEEDRQMWNGKASEAMEVYKKELEEYNKTIASTEE* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2410 487 Coils Coil 90 145 - -
Ahy3g2410 487 Coils Coil 218 238 - -
Ahy3g2410 487 CDD HMGB-UBF_HMG-box 285 348 - -
Ahy3g2410 487 MobiDBLite consensus disorder prediction 1 92 - -
Ahy3g2410 487 MobiDBLite consensus disorder prediction 264 286 - -
Ahy3g2410 487 SUPERFAMILY HMG-box 155 233 IPR036910 -
Ahy3g2410 487 Pfam HMG (high mobility group) box 285 351 IPR009071 -
Ahy3g2410 487 Pfam HMG (high mobility group) box 169 233 IPR009071 -
Ahy3g2410 487 Pfam HMG (high mobility group) box 411 479 IPR009071 -
Ahy3g2410 487 CDD HMGB-UBF_HMG-box 411 476 - -
Ahy3g2410 487 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 411 479 IPR009071 -
Ahy3g2410 487 SUPERFAMILY HMG-box 405 482 IPR036910 -
Ahy3g2410 487 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 168 236 IPR009071 -
Ahy3g2410 487 MobiDBLite consensus disorder prediction 50 88 - -
Ahy3g2410 487 MobiDBLite consensus disorder prediction 24 42 - -
Ahy3g2410 487 Gene3D High mobility group box domain 268 364 IPR036910 -
Ahy3g2410 487 Gene3D High mobility group box domain 156 252 IPR036910 -
Ahy3g2410 487 Gene3D High mobility group box domain 391 487 IPR036910 -
Ahy3g2410 487 SUPERFAMILY HMG-box 273 358 IPR036910 -
Ahy3g2410 487 MobiDBLite consensus disorder prediction 388 425 - -
Ahy3g2410 487 MobiDBLite consensus disorder prediction 9 23 - -
Ahy3g2410 487 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 7 486 - -
Ahy3g2410 487 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 285 351 IPR009071 -
Ahy3g2410 487 CDD HMGB-UBF_HMG-box 170 233 - -
Ahy3g2410 487 SMART hmgende2 410 480 IPR009071 -
Ahy3g2410 487 SMART hmgende2 167 237 IPR009071 -
Ahy3g2410 487 SMART hmgende2 284 352 IPR009071 -
Ahy3g2410 487 MobiDBLite consensus disorder prediction 264 290 - -
Ahy3g2410 487 MobiDBLite consensus disorder prediction 142 171 - -
Ahy3g2410 487 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 7 486 IPR044601 GO:0003677
Ahy3g2410 487 Coils Coil 333 403 - -
Ahy3g2410 487 Coils Coil 461 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2410 Ahy-Chr3 100960474 100962491 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Ahy3g2410 HMG_box 2.00E-16 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2410 K09273 - gmx:100783033 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2729 13 102389289 102391324 Ahy3g2410 3 100960474 100962491 hybridization