Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2406 ATGGAAAATGACGGGCGCTGGGAGCAGAACATACTCATCAACGAGCTAGTTCAGGGGATGGAGGTAGCAAGAAGGTTGAAGGAAGACATGAATGCGACATATTCAGCTGACACAAAAGATTTGTTGCTGCAGAGGATATTATCGTCGTATGAAAAAGCTCTGCTAATTCTAAGATGGAATGCATCAACTTCCAAGTCTCAGAACATGAGTCAAGCAACAGCAACAGCAACCTTGTTTTCAGAGTCACCAATATCTATCAGCGCAAGTCCTCTGAGGGAGGACAATCATAATCAAGAGTTTAAACACGATTCAAAGAAAAGAAAGACAATGGCCAAATGGGTAGATCAAGTGAGAGTGAGCTTTGAGAGTGGCCTTGAAGGACCACATGAAGATGGTTACAACTGGAGAAAATATGGACAGAAAGATATCCTTGGTGCCAAATATCCCAGAAGTTATTATAGGTGCACCTTCCGGAACACTCAGGGGTGCTGGGCCACGAAGCAAGTACAGAGATCAGACGAAGATCCTACCATATTTGACATAACTTACAAAGGAAGGCATACCTGTTCTCAGGGAAACAAGGCTGTTCCGCAACCGAAATCGCCAGACAAACATGAGCAACTGCAATGTCATAGTAACGAAATTCAGCATAGACAAACATCAGAAGAAAGCCTGACAACTTTCGGGACCATTATGACAGTTAAAAGAGATATGGTGGCAAATGGAGAGATGGAATATCCTTTCACTTTCCCTTCAACTTCATTTGGAAGCATGGCACAAGAAAGCTACAGCTTGATTCCTTCAGCCCTGGAGAACGAATCCTTCTTGAGCAGTCATTTCCAAACTCACTTATTATATCCAAACATGCAAGAATTTAAATACCTGCCATCTACGTCTTTCCAGATGAATGAGCTTGATGGGATCTATAATAGGCCACTTTCAGAATCAGATATTACTGAGATCATTTCCACCAACACATCCACCACCAATTCTCCAGTTCCGGAGTTCAATTTCTCACTTGATCCAGTGGAAATTGATCCAAATTTCCCTCCCAATACCCTGGATTTTTCTCCTAGAGCCCTTAACAACAAGAACATCTAG 1101 0.4242 MENDGRWEQNILINELVQGMEVARRLKEDMNATYSADTKDLLLQRILSSYEKALLILRWNASTSKSQNMSQATATATLFSESPISISASPLREDNHNQEFKHDSKKRKTMAKWVDQVRVSFESGLEGPHEDGYNWRKYGQKDILGAKYPRSYYRCTFRNTQGCWATKQVQRSDEDPTIFDITYKGRHTCSQGNKAVPQPKSPDKHEQLQCHSNEIQHRQTSEESLTTFGTIMTVKRDMVANGEMEYPFTFPSTSFGSMAQESYSLIPSALENESFLSSHFQTHLLYPNMQEFKYLPSTSFQMNELDGIYNRPLSESDITEIISTNTSTTNSPVPEFNFSLDPVEIDPNFPPNTLDFSPRALNNKNI* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2406 366 PANTHER WRKY TRANSCRIPTION FACTOR 41-RELATED 1 353 - -
Ahy3g2406 366 SMART WRKY_cls 129 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy3g2406 366 Pfam WRKY DNA -binding domain 130 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy3g2406 366 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 353 IPR044810 GO:0003700
Ahy3g2406 366 SUPERFAMILY WRKY DNA-binding domain 128 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ahy3g2406 366 Gene3D WRKY domain 115 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ahy3g2406 366 ProSiteProfiles WRKY domain profile. 124 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy3g2406 366 MobiDBLite consensus disorder prediction 88 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2406 Ahy-Chr3 100847753 100849627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2406 7 350 WRKY Transcription Factor Family AT4G11070 36.158 4.32e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ahy3g2406 WRKY 8.80E-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2406 - - adu:107480050 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2722 13 101857193 101859191 Ahy3g2406 3 100847753 100849627 hybridization
Ahy5g1539 5 40950324 40952222 Ahy3g2406 3 100847753 100849627 PCT