Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2375 ATGCAGGATCGAAAGCGAGAGCACAAGGTTGTCACGCGATGTGGGTGTTTGGCAGAGATGAGGATAAAGCCGAAAGGTGATAGCGGAATTTGGTATGTTTCACGCTTCGTAGATGACCATAACCATGATCTTCTACCTGCAAAGTTTGTGCCATACCTGCCTTCGTACCGGAAGATTTCTGATGTTGATCTAGCCCATATGGACAGCTTGAGGCAAGTTGGAATTTCTATTCCAAAAATATATGAGTTAATTGCTGCGCAGGCAGGCGGATTTAACTTTGTTCCTTTCACAAAGAGAGATATGTACAATGAGGTTAGGAGGCAACGTGCCTTAAGGAATGGTGATGTGAATGCGGCTCTAAGGTTTTTTGAGAGATGTGCAAGGGGGGATGAGAAGATGTTCTGGAGGTTTGAAGTTGGGCCAGACCAACATATGTGTGACCTTTTTTGGAGCGACGGGCGTAGCCAGGATGATTACAAGATCTTTGGTGATGTTCTTGCCTTTGATGCAACATATGGTCGAAACAAGTACAATCTACCAGTTGTTGTGTTTTCTGGGGTCAACCATCACAACCAGACATGCGTGTTTGCCACAGCCATGGTCTCGTGTGAATCTCAAGCGTCGTATGTTTGGGTGTTGAGAAAGTTTTTGGAATGCATGGGTGGTAAAGCTCCTAAGGCGGTAATAACTGATGGGGATCGATCCATGCGCTTAGCCATTCAAGAAGTATTTCCTGAAGCTCATCATCGGTTGTGTGCATGGCACCTACTGAGGAATGCAACCGTGAATGTGTGCAAGCCGCGGTTCACAATGCTTTTGAGAAGTTGTATGTTGGCTGACATAGAAGTTGAAGAGTTCGAGAAGCAATGGGAGGCGATGGTGGAAGAGTGCGGGGTCAGAGAAGTCGAGTGGGTTAAGGATTTGTACACGAAGAAGTTATCATGGGCCACCGCGTACATTCGTGGGTGTTTTTTTGCCGGCCTAAGGACAACATCCCGTTGTGAGTCATTGCATGCAAAGTTAAGGCGGTTTGTGGAGAGTCGGTATGGGATCTTGGAGTTTGTAACAAACTTCCAGCGCTGTGTGGATTTCCTAAGAGATAACGAGGAGGAGCTTGATTTTCGATCATTGTATGGAACCCCTGTTCTTCAGACTCAGTTCCCAGAGTTGGAAAAATCTGGTGCAGTTAATTACACGAGGGAAATATATTTTCGTTACCGTGAGTCTTTGAAGAGATGCGTTCGTACGACAATTTTGGAGTGCAAGCAGATGGAGGAAAAATCTGTTTACGTAACACAAAAGTATCGTAGGCCAGAGTTGAAGTGGAATGTGGAACACGATCACCGCACCGATTCCTTTTACTGTACTTGTTTGAGGATGGAGTCATTCGGTCTACCCTGTGTTCACATACTAGCAGTGTTGGTGCGATTAGATGTTGCCTCTCTTCCAAAGAGTCTTGTTCTTCAGCGGTGGTCGAAGACCGCCAAGGTTCACGTCATGGAGCCAAGCATTGTGGACGAGGGCGGTGATGCAATAGCACTTTATAAGAGTCGAGTAGGGGTGTTCCTGCATCATTGTAAGAGGTTTGCTGCAGTTGCATCTATGAGAGACGAGGATTTTAAAGTGTATTTGGAGAAGGTAGTTGGGGACACAGTTGTGTTGGAATTGAAGAATGGGGTAGGACGATCGGCTGTTGCGGGAACCGATAATTTGGAGCAAGATGTGGTGCGTGATCCGGTTGGTGTGCGCACAAAGGGCACTGGTCGTGGACACGAGCCACTTGGTTCCAGGGGAATAAAGAGACGGAAATGCAGCACATGTGGCGAGTTAGGGCACCGACGCACCAGGTGTCCGAATGGGTTACCCACCGAGACTGTTGCTACACAGGATACCAATCAAGAGATGTTATCACAGACAACAGCCACGGGTTCTGGGAATAGGAAGAATGGTCAGAGGTTGAGGAAGACTCGTGACGGTCAAAATACTATGAGTAGCTGCCAAGTTTAA 2007 0.4699 MQDRKREHKVVTRCGCLAEMRIKPKGDSGIWYVSRFVDDHNHDLLPAKFVPYLPSYRKISDVDLAHMDSLRQVGISIPKIYELIAAQAGGFNFVPFTKRDMYNEVRRQRALRNGDVNAALRFFERCARGDEKMFWRFEVGPDQHMCDLFWSDGRSQDDYKIFGDVLAFDATYGRNKYNLPVVVFSGVNHHNQTCVFATAMVSCESQASYVWVLRKFLECMGGKAPKAVITDGDRSMRLAIQEVFPEAHHRLCAWHLLRNATVNVCKPRFTMLLRSCMLADIEVEEFEKQWEAMVEECGVREVEWVKDLYTKKLSWATAYIRGCFFAGLRTTSRCESLHAKLRRFVESRYGILEFVTNFQRCVDFLRDNEEELDFRSLYGTPVLQTQFPELEKSGAVNYTREIYFRYRESLKRCVRTTILECKQMEEKSVYVTQKYRRPELKWNVEHDHRTDSFYCTCLRMESFGLPCVHILAVLVRLDVASLPKSLVLQRWSKTAKVHVMEPSIVDEGGDAIALYKSRVGVFLHHCKRFAAVASMRDEDFKVYLEKVVGDTVVLELKNGVGRSAVAGTDNLEQDVVRDPVGVRTKGTGRGHEPLGSRGIKRRKCSTCGELGHRRTRCPNGLPTETVATQDTNQEMLSQTTATGSGNRKNGQRLRKTRDGQNTMSSCQV* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2375 668 ProSiteProfiles Zinc finger SWIM-type profile. 440 478 IPR007527 GO:0008270
Ahy3g2375 668 ProSiteProfiles Zinc finger CCHC-type profile. 602 619 IPR001878 GO:0003676|GO:0008270
Ahy3g2375 668 SUPERFAMILY Retrovirus zinc finger-like domains 585 620 IPR036875 GO:0003676|GO:0008270
Ahy3g2375 668 MobiDBLite consensus disorder prediction 618 668 - -
Ahy3g2375 668 Pfam FAR1 DNA-binding domain 4 46 IPR004330 -
Ahy3g2375 668 MobiDBLite consensus disorder prediction 621 649 - -
Ahy3g2375 668 Pfam SWIM zinc finger 454 475 IPR007527 GO:0008270
Ahy3g2375 668 Pfam MULE transposase domain 165 259 IPR018289 -
Ahy3g2375 668 PANTHER OS02G0262500 PROTEIN 5 498 - -
Ahy3g2375 668 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 5 498 IPR031052 GO:0006355
Ahy3g2375 668 SMART 26again6 453 480 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2375 Ahy-Chr3 98094080 98099161 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Ahy3g2375 MULE 7.20E-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2375 - - adu:107485726 871.692