Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2357 ATGGAAATGGAATTGGAAGCTGAAGCTGAAGCTGATTTTATGACGAATGACATGCTCACACTCCCACACGATCCCTTTGATCCCAACCACATCCATGATGATGATAATTTGGCTATTGAAGGCGAAAGATGTGGAATATGCATGGATATCGTCATTGATAGGGGAGTTCTCGATTGCTGTCAGCATTGGTTCTGTTTTGTATGCATTGATAACTGGGCTACAATCACTAATCTCTGCCCACTTTGCCAGAACGAGTTTCAGTTGATCACTTGTGTACCAGTTTATGATACCATTGGAGGCAATAAAGTTGAAGATGACTCATTCTCCAGAGATGACGAATGGTCCATTGAAGGGAAGAACAATACATTATCGTTTCCCTCCTACTACATTGATGAAAATGCAGTTACTTGTTTGGATGGTGATGGCTGCAAAGTTCGAAGTGGATTGGAAACTATTGAAGGAGATTCTGATCTTGATACATCAATTGCATGTGATTCATGTGATACATGGTACCATGCCTTCTGTGTGGGATTTGATACAGAAGGTACATCTGAAAGTACATGGTTATGTCCAAGATGCGTGGTCGGTGAAGTTTCTAAAGGAAGAGACACTGATTCAATGGAGAGCACGATGGTAGAATGTAACCCAGAGCATATTAACAATCAATGTCAGGCTGAGGATTCCTTTTCAAGAAAAGTTTGTGTGTCTGTTGCTGATGCGGGAGAGACAGCTGTTGTTGTTTCAATGGTTGATGGACATAAATGGGTTCCATCAACAAGCGAGAAAAGCCTATTGCCTCTTGAACTTGGCAGGGAACAATTGACTGCATCATGTATATTAGATTCTGACACAACTAATCAGCAGAAAGCAATGGAGAAGAAGATTATGTCACCAATTGTGAAGGAACAAGAGCTGGAGTTGTGCTTATCACACAATGTATCTGGTAGCCTAAGTTCTAAATCCTTGGAGCATAATGATCGAAAGGAAAGTGCTCATGGAGCAAGGAGTGGACCAAGTAACCTTGATGAAACCAAGTTAGCTGATGAGTCCCATGTCAAAACTAGTCCTTCTAGAAATGAATCTGATATGGGTCTTCATCTTGGTTTATCAGTGGGCTCTTTCCTATCAGTTGATAATGTGGACAAGGATGGAATAAAAGATCACACAACTGGTGTCAAGCACCTGAGTTCAGATGAATGTTCTATGGAAGGAGATGTAATTGAAAATGATGTTAAGAAGGATAATACTAGTGTAACTGCTGGGAAGAGAAAGCATGTTGATCACAGCAATGATGGAGGTCATTTGAAAGTTGATGGGGATGTGAAGCCTGAACTTCCAATTGAAGTGTCTCAAAAGAAAATTAGAGCTGCTGGTGGTCAAATGACTAGTATTAATAACTCAGCTGATGCCCAGCTTTCAGACAATGGTCAAAAGAGCTCTGCTTTGAACCATTCTGCATCCAAGGAGGTTGTCAGACCAACTATAATGAATATAGTTAAAGGTACAAACCGTAGGCTTTCCAAGGGACCTACTGGCACTAATTCGTCTGACAATGTGACTAGAAAGGATGAAAATATGGCTGGATTGAGGGTAAAAAAGATCATGAAGAGAGTTGCTGATGATGGAGAATCATCCTTGATAGTTCAAAATCTAAGGAAGGAAATTAGAGAAGCTGTCCGTAACAAATCCTCTATAAACTTTGAGGGAAATATTGATACAAAGCTTCTTGCAGCATTCAGGGTTGCTATAGCTGGACCCAAAACTGAACCTGTAAATAAGTTAACCCCTTCAGCTTTAAAGGCAAAGAAGTCGATGTTGCAGAAAGGAACGGTACGTGAGCATCTTACAAAGAAAATTTTTGGGACTTCAAATGGAAAAAGAAAGCGTGCATGGGATAGGGACTGTGAAATTGAGTTTTGGAAATATCGGTGCATGAGGGCTACAAGGCCTGAAAAAATTGAAACTTTAAAATCAGTTCTAGATCTACTAAGAAAAAATTCAGAGTCAACACAGGGTCCTGAATGTCAGGCCAAGGATACTATTCTTTCCAGGTTGTATCTAGCAGATACATCTGTTTTCCCACGGAAAGATGATGTCAAGCCCCTCTCTGTACTTAAAACTGATGCTAGCTCAGAGCAGACTAAACAAAATAACCCGTCAGGAACAGATATAAAAAATCTTTCATGCAATGCCAGAGTTTGTTCATCTGAAACAAAAGTAGATAAGAAGATTATACATGGTTCAGCTAGTGATAATTCGGCTTCTCGTAAGACATCAGTTTCTTCTTCAGCTGGTGCCAAAGTAAATGCAAAGGAATTAGGACTTAAATCAGATTCTACGAAGAGTGATAAAAAGAAATGGGCTTTAGAGTTTCTTGCTAAGAAAACAGCTGCTGATAGCAAAAGGACGGCAAATGGAAGTCAAGAAGACAATGCACTTTTTAAAGATAAATTTCCTTTGCTTACACAGCTTTACCGCCTGACAGAGCGCTTGTTGAGGAACACAAATCTGCCAGTCATTCGCAGAACTGCAGATACAGAATTGGCTGTTGCAGATGCAATCAATATTGAAAAGGAGGTTGCTGACAGATCGAGCAGCAAGCTTGTGTATTTGAACCTCTGCTCACAAGAGCTCCGACATCGTGCAAATAACACAAAATCCGATGTAGCTGAAGATACAAATCCCCCGGAGTCACCTGCCAAGCTTCCTGATCAATTAGAACATAATGCTGATGATTGTTCAACCGACCCTGCTGTTGAAGCCTTGAAAAATGCTGGTCTATTGTCTGATTCACCGCCTAGCAGTCCACATGATAACAGAGAAATAGGTAATGAAAATGATACTTCAGGGCCTGATAATATACTTGAATTGGATTCTCATCCTGAGCTGGACATTTATGGTGATTTTGAGTATGATTTGGAAGATGAAGACTACATTGGGGTTTCAAAGGTCTTAAACCCAAAACCAGAGGAAAGTGACTCGAAAGTGAAACTTGTTTTCTCCACCATGAACTCGAAGTCAGATACAGCTGTGGATGACACAGACTGTAAAGGGTCCCTTAACAGTGAAGTACTACGGGATGCCTCCGGCTCAACAACCTCTCACATCGAAACAGTCCCTAGGGACTCAGCAACTGATGCAGAGATTGGCAGGCCTTCTGCTTCGGTTTCTTCTGAGTTATGTGAGAGTGCTGTCGAGCCAGCTGATTCCGAATTTGAAGAATTATATGGCCCTGACAAAGAACCACTCATAAAAAAATTTCCAGATGCCGAACCAAGAACAACATGTGGAGAGGGCAAGAAAGAAACACCAAGTGAGGCCACTGACAAATCTAATGTATCTGAAACTGGTAAAAATTCCCCAGGAAAAGAAGAGAAATCTGATGATATGAGTGCGAAGCAGTCTGAGTGTGACTCGATAAACCATGTAACAAAGAAGGTAGAAGCCTATATCAAGGAGCATATGAGGCCACTGTGCAAGAGTGGTGTGATCACAGCAGAACAATACAGGTGGGCAGTCGCAAAAACAACAGAGAAGGTTATGAAGTATCATTGCAAAGCAAAGAATGCTAATTTCCTCATAAAGGAAGGTGAGAAAGTAAAGAAGCTTGCAGAGCAGTATGCCGAAGCAGCCCAACAGAACAGAAAAAATTGA 3654 0.4102 MEMELEAEAEADFMTNDMLTLPHDPFDPNHIHDDDNLAIEGERCGICMDIVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGGNKVEDDSFSRDDEWSIEGKNNTLSFPSYYIDENAVTCLDGDGCKVRSGLETIEGDSDLDTSIACDSCDTWYHAFCVGFDTEGTSESTWLCPRCVVGEVSKGRDTDSMESTMVECNPEHINNQCQAEDSFSRKVCVSVADAGETAVVVSMVDGHKWVPSTSEKSLLPLELGREQLTASCILDSDTTNQQKAMEKKIMSPIVKEQELELCLSHNVSGSLSSKSLEHNDRKESAHGARSGPSNLDETKLADESHVKTSPSRNESDMGLHLGLSVGSFLSVDNVDKDGIKDHTTGVKHLSSDECSMEGDVIENDVKKDNTSVTAGKRKHVDHSNDGGHLKVDGDVKPELPIEVSQKKIRAAGGQMTSINNSADAQLSDNGQKSSALNHSASKEVVRPTIMNIVKGTNRRLSKGPTGTNSSDNVTRKDENMAGLRVKKIMKRVADDGESSLIVQNLRKEIREAVRNKSSINFEGNIDTKLLAAFRVAIAGPKTEPVNKLTPSALKAKKSMLQKGTVREHLTKKIFGTSNGKRKRAWDRDCEIEFWKYRCMRATRPEKIETLKSVLDLLRKNSESTQGPECQAKDTILSRLYLADTSVFPRKDDVKPLSVLKTDASSEQTKQNNPSGTDIKNLSCNARVCSSETKVDKKIIHGSASDNSASRKTSVSSSAGAKVNAKELGLKSDSTKSDKKKWALEFLAKKTAADSKRTANGSQEDNALFKDKFPLLTQLYRLTERLLRNTNLPVIRRTADTELAVADAINIEKEVADRSSSKLVYLNLCSQELRHRANNTKSDVAEDTNPPESPAKLPDQLEHNADDCSTDPAVEALKNAGLLSDSPPSSPHDNREIGNENDTSGPDNILELDSHPELDIYGDFEYDLEDEDYIGVSKVLNPKPEESDSKVKLVFSTMNSKSDTAVDDTDCKGSLNSEVLRDASGSTTSHIETVPRDSATDAEIGRPSASVSSELCESAVEPADSEFEELYGPDKEPLIKKFPDAEPRTTCGEGKKETPSEATDKSNVSETGKNSPGKEEKSDDMSAKQSECDSINHVTKKVEAYIKEHMRPLCKSGVITAEQYRWAVAKTTEKVMKYHCKAKNANFLIKEGEKVKKLAEQYAEAAQQNRKN* 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2357 1217 PANTHER RING FINGER PROTEIN 41, 151 114 1214 - -
Ahy3g2357 1217 MobiDBLite consensus disorder prediction 342 356 - -
Ahy3g2357 1217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 142 IPR013083 -
Ahy3g2357 1217 Coils Coil 548 568 - -
Ahy3g2357 1217 MobiDBLite consensus disorder prediction 1073 1108 - -
Ahy3g2357 1217 SMART ring_2 44 82 IPR001841 -
Ahy3g2357 1217 MobiDBLite consensus disorder prediction 884 913 - -
Ahy3g2357 1217 ProSiteProfiles Zinc finger PHD-type profile. 76 196 IPR019787 -
Ahy3g2357 1217 PANTHER RING/U-BOX PROTEIN 114 1214 - -
Ahy3g2357 1217 MobiDBLite consensus disorder prediction 317 364 - -
Ahy3g2357 1217 SUPERFAMILY FYVE/PHD zinc finger 157 196 IPR011011 -
Ahy3g2357 1217 MobiDBLite consensus disorder prediction 1119 1139 - -
Ahy3g2357 1217 SUPERFAMILY RING/U-box 35 89 - -
Ahy3g2357 1217 ProSitePatterns Zinc finger RING-type signature. 60 69 IPR017907 -
Ahy3g2357 1217 MobiDBLite consensus disorder prediction 416 440 - -
Ahy3g2357 1217 Pfam PHD-finger 157 194 IPR019787 -
Ahy3g2357 1217 ProSiteProfiles Zinc finger RING-type profile. 44 83 IPR001841 -
Ahy3g2357 1217 MobiDBLite consensus disorder prediction 926 958 - -
Ahy3g2357 1217 MobiDBLite consensus disorder prediction 1023 1139 - -
Ahy3g2357 1217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 200 IPR013083 -
Ahy3g2357 1217 MobiDBLite consensus disorder prediction 456 485 - -
Ahy3g2357 1217 SMART PHD_3 142 194 IPR001965 -
Ahy3g2357 1217 MobiDBLite consensus disorder prediction 1024 1040 - -
Ahy3g2357 1217 Pfam Zinc finger, C3HC4 type (RING finger) 44 82 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2357 Ahy-Chr3 94152233 94159855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2357 44 95 C3H Transcription Factor Family AT3G58030 37.037 7.58e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ahy3g2357 PHD 1.40E-08 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2678 13 97907906 97915264 Ahy3g2357 3 94152233 94159855 hybridization