Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2320 ATGAGACTCTTTTGGCAGATTTGGGATACAACAGGACAAGAAAGGTTCAATAGTTTAGGTGCTGCATTTTATAGAGGTGCAGATTGTTGTGTTTTGGTGTATGATGTAAATGCACACAACACATTTGACACACTAAACAATTGGCATGATGAGTTCATTAAGCAGAATTCTTGGTGGCAGTCATGGTGTGCCTCAAGTACATTACAAGGGCAGCTTCTGTGGAATTACTGCATTTTAGATGAAGGGCATATAATCAAGAATGCTAAGTCCAAAGTTACACTTGCTGTAAAGCAGTTAAAAGCCCAACACCACTTGATATTGAGTGGGACTCCAATATAG 339 0.3923 MRLFWQIWDTTGQERFNSLGAAFYRGADCCVLVYDVNAHNTFDTLNNWHDEFIKQNSWWQSWCASSTLQGQLLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHHLILSGTPI* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2320 112 Pfam SNF2-related domain 65 112 IPR000330 GO:0005524|GO:0140658
Ahy3g2320 112 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 56 IPR027417 -
Ahy3g2320 112 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 112 IPR027417 -
Ahy3g2320 112 ProSiteProfiles small GTPase Rab1 family profile. 1 112 - -
Ahy3g2320 112 PANTHER RAB FAMILY 5 57 - -
Ahy3g2320 112 Gene3D - 2 63 IPR027417 -
Ahy3g2320 112 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 5 57 - -
Ahy3g2320 112 Gene3D - 64 112 IPR038718 -
Ahy3g2320 112 Pfam Ras family 6 57 IPR001806 GO:0003924|GO:0005525
Ahy3g2320 112 SMART rab_sub_5 6 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2320 Ahy-Chr3 89367790 89368960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2320 74 112 RAD5 or RAD16-like Gene Family AT5G22750 48.718 2.27e-06 43.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy3g2320 Ras 4.60E-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2320 K07897 - gmx:100787120 105.145