Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2270 ATGGGAAGAAGTCCATGCTGTGACAAAGCTAACGTGAAAAGAGGGCCATGGTCTCATGAAGAAGATGAAATACTCAAAAGCTACCTCAACAAACATGGCTCTGCTGGTAACTGGATAGCCCTTCCTCTCAAAGCAGGCCTTAAACGCTGCGGGAAAAGCTGTCGTCTGAGATGGCTCAACTATCTCAGGCCTCACATCAAGCATGGAGCTTTCACTGACGATGAAGACAAACTTATCTCCACCCTTTATGCTACCATTGGAAGCAGGTGGTCCCTTATAGCAGCTCAGCTACCTGGAAGAACTGATAATGATGTCAAAAATCACTGGAACACTAAGCTTAAGAAGAAGTTCTTCGCAGGAGGAATAAACACTGCCAATGCCACTACTGTCCTCAACACTGCTTCTTCAAAGTTCCCAACTTTCACTCCTCAAGTTGAAGCCTTTGATCATAATAACAACACCCCAACTACTTGTTTTGAGTCTGCTGTTTTGGATTTGTACCAAACACCATTCCCAGTTCCATCAAAAATGCTGCCTTTGGAATCAGACATTTCAGCTACTAATCCCTTGGTAATGAAAGAGAAAGATCATGTTGGTCATCAGTGGCTTGGTTATTATGCTGAAGAAGATGATTCCTTCTTGCTTGATATTGTGCAAAATGGATTTGCTTATTCTCAAGATAAAAACACCCAACTAGACCCATCATCGTCGTCGTCGTCGTCATATATCTAA 732 0.4276 MGRSPCCDKANVKRGPWSHEEDEILKSYLNKHGSAGNWIALPLKAGLKRCGKSCRLRWLNYLRPHIKHGAFTDDEDKLISTLYATIGSRWSLIAAQLPGRTDNDVKNHWNTKLKKKFFAGGINTANATTVLNTASSKFPTFTPQVEAFDHNNNTPTTCFESAVLDLYQTPFPVPSKMLPLESDISATNPLVMKEKDHVGHQWLGYYAEEDDSFLLDIVQNGFAYSQDKNTQLDPSSSSSSSYI* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2270 243 Gene3D - 69 137 - -
Ahy3g2270 243 CDD SANT 16 62 IPR001005 -
Ahy3g2270 243 PANTHER OS09G0431300 PROTEIN 1 135 - -
Ahy3g2270 243 Gene3D - 7 68 - -
Ahy3g2270 243 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Ahy3g2270 243 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Ahy3g2270 243 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Ahy3g2270 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Ahy3g2270 243 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Ahy3g2270 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Ahy3g2270 243 SMART sant 13 64 IPR001005 -
Ahy3g2270 243 SMART sant 67 115 IPR001005 -
Ahy3g2270 243 CDD SANT 70 113 IPR001005 -
Ahy3g2270 243 PANTHER OS09G0431300 PROTEIN 1 135 - -
Ahy3g2270 243 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2270 Ahy-Chr3 81115934 81116978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2270 1 119 MYB Transcription Factor Family AT5G57620 74.790 4.81e-67 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy3g2270 Myb_DNA-binding 4.10E-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2270 K09422 - gmx:778160 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2589 13 87880584 87881603 Ahy3g2270 3 81115934 81116978 hybridization