Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2257 ATGGAAGCTAGTACCGGGCTTTTTGCTGCGACCCATGACAACAATGATCTTGTGGTCATTCAAGGACACAACGAGCCAAGGCCTGTGAAGAACTTAGATGGCCAACTATGTGAAATATGCGGTGACTTAGTGGGACTAACTGTGGACGGAGACTTGTTTGTAGCTTGCGAGGAATGTGGGTTTCCCGTGTGTAGGCCTTGTTACGAGTACGAAAGAAGGGAAGGGACTCAAGTTTGCCCCCAGTGCCATACAAGATACAAGCGTATCAAAGGAAGCCCAAGAGTAGAGGGAGACGAAGACGAAGACGATGTGGATGATATAGAACATGAATTCAAAATGTTGGAAGAAAAGGAAGAGTTGCGGCAAAGGAAGAAGAGTAGCGGATATGATAATGAGAATGCTAAATCAGCATCCTTGGCCAAGGTGAAAGGGGAGCTGCCTGTATCTACATACCACGAGCCGGGCTATGAAAAATTTGCTGACAAAGAGAGAGCAGATGACTGGAAGTTAAACCAAGGAAATCTATGGCCTGAAACTGAGGCTACAGTTGATCCCGAAAAGGCTATTAAAGATGAAAGTAGACAGCCACTCTCAAGAAAGGTGGCGATACCATCCGGAAGACTCAGCCCTTACAGGATGATGGTTGCAGCGAGGCTTGTGATTCTCTTGCTATTCTTTCAATACAGAATCTTCCACCCAGTACCTGAAGCAATTGGACTCTGGTTCACATCTGTGGTGTGTGAAATTTGGCTAGCATTGTCATGGCTGGTTGACCAACTTCCTAAATGGTTTCCCATTGATCGCCAGACGTATATTGATCGTCTCTCAATCAGATTTGAACCGGAGGACAAGCCGAATATGCTTTCTCCAATAGATATATTTGTCACTACAGTGGATCCAACGAAGGAACCTCCTCTAGTTACAGCCAATACTGTTCTTTCAATCTTGGCGCTAGATTACCCAGTTGACAAAATCTCATGTTACGTTTCTGATGATGGAGCTTCCATGCTCACCTTTGAGGCTCTTCAAGAAACTGCTGAATTCGCAAGAAAATGGGTACCGTTCTGCAGAAAATACTCTGCTGAACCTCGATCACCAGAGAAGTACTTCTCTGAGAAGATAGATTACATAAAGGATAAGCTTCAGACAACATATGTAAAAGAACGTCGTATTATGAAGAGAGAATATGAAGAATTTAAGGTGAGGATTAATGCACTTGTGGCCAAGTCCATGAGAGTTCCAGCAGAAGGGTGGACAATGAAAGATGAGACACCGTGGCCGGGAAACAACACCAACGATCATCCAAGTATGATACAAGTCCTTATTGCTCGAGGCGGAGGCCACCACCCCGACCAACTTCCCTGTCTTGTATACATATCTCGTGAGAAAAGGCCGGCATTCCAACACCACAACAAAGCTGGTGCCATAAATGCCTTGCTTCGAGTATCAGCAGTGCTAAGCAATGCTCCCTTCGTGCTGAACTTGGATTGCAATCATTATGTTAATAACAGCAAAGTCGTGCGTGAGGCCATGTGTTTCTTTATGGACATCCAACTTGGGAATGGCATTGGCTTTGTTCAGTTTCCTTTAAGATTTGACAGCCTTGACAGGAACGATCGTTATGCCAACAAGAACACTGTTTTGTTTGATATTAACCTAAGGTGCCTAGATGGAATTCAAGGACCTGCTTATGTTGGTTCAGGATGCATCTTCAGCAGGAAAGCTATATATGGTTTGGAACCACCAAAGGTGTCAAAACCGCCGCGAATTGTTCAAGTGCACTCAAAACAGGATGAAAATGAAGAGGAAGATGCAGGAATAATAGAAGAAGACAAGCAGCTACTGAAATCAGAGATGAATTTTGAGAACAGATTTCAAAAATCACATTTTGCTAATTCTTCATCAACAGAAGAAGGTGGCGTCGATGCTTCTTCCGGTCAGGCGGCCCTGCTCAAAGAAGCCATTCATGTCATGAGCTGCAAATATGAAGACAGAACTCTGTGGGGATATGAGGTTGGCATGAGCTATGGATCTATAGCTGCAGATACTCTTACGAGTTTCAAGTTGCATAGTCGAGGCTGGGAATCGGTATATTGCATGCCGAAGAGAGCTGCATTCAGGGGGACAGCTCCTATCAACCTTACAGATAGACTTAACCAGGTGCTTAGATGGGCGGTGGGATCACTTGAGATCCTCTTCAGCCGCCATTGCCCGCTGTGGTACGGCTTCAACGAAGGAAAACTGAAGACGCTTCAAAGGGTTGCCTATATTAACAGCACTGTCTACCCCTTCAGCTCCATACCTCTTTTGATATATTGTCTCATTCCTGCTATCTGCTTGCTCACTGATAAATTCATCACACCTTCGGTAGGGACATTCGCAAGTCTAGTCTTTATTAGTCTATTCATCACCATCTTTGCATCGGCCATCCTCGAATTGAGATGGAGTGGTGTTAGCCTTGAGGAATGGTGGAGGAATCAGCAATTCTGGGTCATCGGAAGTGTGTCTGCACACATGTTCGCAGTTGTACACAGCCTCATGAAAGCCCTGCCCCTGGTAAGAAGCAATATCAACTTCATCACCGTATCGAAGGCGCCAGACGAAGGGCAGTTCCACCAGCTGTACACCATCAAATGGACTGCTCTCCTTATACCTCCAACTACAATCATAATAATCAACCTCATTGGCATTGTAGCTGGTTTCACAGATGCCATAAACAGTGGTGGACATTCTTGGGGAGCACTTCTTGGGAAGCTCTTCTTCTCTTTGTGGGTTATTGTTCATTTGTACCCATTCCTTAAAGGCCTCATGGGTAGGCAGAACCGAACACCAACGCTTATAGTCATATGGTCGGTGCTTTTGGCTTCTATCTTCTCCTTGGTTTGGGTAAGGATTGACCCTTTTGTGTTGAAAACAAAAGGACCAGACGCTAAGCAATGTGGAATCAGTTGTTGA 2955 0.4501 MEASTGLFAATHDNNDLVVIQGHNEPRPVKNLDGQLCEICGDLVGLTVDGDLFVACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGSPRVEGDEDEDDVDDIEHEFKMLEEKEELRQRKKSSGYDNENAKSASLAKVKGELPVSTYHEPGYEKFADKERADDWKLNQGNLWPETEATVDPEKAIKDESRQPLSRKVAIPSGRLSPYRMMVAARLVILLLFFQYRIFHPVPEAIGLWFTSVVCEIWLALSWLVDQLPKWFPIDRQTYIDRLSIRFEPEDKPNMLSPIDIFVTTVDPTKEPPLVTANTVLSILALDYPVDKISCYVSDDGASMLTFEALQETAEFARKWVPFCRKYSAEPRSPEKYFSEKIDYIKDKLQTTYVKERRIMKREYEEFKVRINALVAKSMRVPAEGWTMKDETPWPGNNTNDHPSMIQVLIARGGGHHPDQLPCLVYISREKRPAFQHHNKAGAINALLRVSAVLSNAPFVLNLDCNHYVNNSKVVREAMCFFMDIQLGNGIGFVQFPLRFDSLDRNDRYANKNTVLFDINLRCLDGIQGPAYVGSGCIFSRKAIYGLEPPKVSKPPRIVQVHSKQDENEEEDAGIIEEDKQLLKSEMNFENRFQKSHFANSSSTEEGGVDASSGQAALLKEAIHVMSCKYEDRTLWGYEVGMSYGSIAADTLTSFKLHSRGWESVYCMPKRAAFRGTAPINLTDRLNQVLRWAVGSLEILFSRHCPLWYGFNEGKLKTLQRVAYINSTVYPFSSIPLLIYCLIPAICLLTDKFITPSVGTFASLVFISLFITIFASAILELRWSGVSLEEWWRNQQFWVIGSVSAHMFAVVHSLMKALPLVRSNINFITVSKAPDEGQFHQLYTIKWTALLIPPTTIIIINLIGIVAGFTDAINSGGHSWGALLGKLFFSLWVIVHLYPFLKGLMGRQNRTPTLIVIWSVLLASIFSLVWVRIDPFVLKTKGPDAKQCGISC* 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2257 984 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Ahy3g2257 984 SUPERFAMILY Nucleotide-diphospho-sugar transferases 300 793 IPR029044 -
Ahy3g2257 984 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Ahy3g2257 984 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Ahy3g2257 984 SUPERFAMILY RING/U-box 22 105 - -
Ahy3g2257 984 PANTHER CELLULOSE SYNTHASE 1 984 - -
Ahy3g2257 984 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 984 - -
Ahy3g2257 984 Pfam Cellulose synthase 291 589 IPR005150 GO:0016020|GO:0016760|GO:0030244
Ahy3g2257 984 Pfam Cellulose synthase 596 978 IPR005150 GO:0016020|GO:0016760|GO:0030244
Ahy3g2257 984 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 432 580 IPR029044 -
Ahy3g2257 984 Coils Coil 97 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2257 Ahy-Chr3 79481711 79490083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2257 1 984 Cell Wall Biosynthesis AT5G17420 63.981 0.0 1355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2257 K10999 - gmx:100777270 1608.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2578 13 86876800 86884125 Ahy3g2257 3 79481711 79490083 hybridization
Ahy3g2257 3 79481711 79490083 Ahy11g2935 11 146943514 146948558 PCT
Ahy3g2257 3 79481711 79490083 Ahy1g2784 1 107807732 107811460 PCT