Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2244 ATGGCTGGAATACTTCCCGGAGTTGAATGTGCTAGAAGGAGAAGACTCCATCAAAGTAAAGGATTCTTGGATTTACCATCTTCCACGGCTTCTTCACATAACTCTACAAGGCGCACTTCTTTTGGTTTGTATGCAGCAAACCATGAGCCCCTTCATTCCTCTTCATCTCCTTCTTTGCTGCATAGAAGCGTGATCTACCAGGCGCAACCAGATTTGAGTATGGTTGGAGAAGCCAGAGAAGCCAGACAAAGATTGGATGACAAATTCAGATCACACAGGAAATTGGAAAACAAAAGCATAAAATGTTCGGAAAATAGACAAGCAAGCATAGCAGAGTTGCACACAGAGGTATATGGTTCAAAGAAAAGTGGTTCTAGAAGGTTCAATTGGTCCAAATTGAGGTGGAAAGCCTCAGAACAAGAGGATTGTGCTGTGTGCTTGGAGTTATTCAAGGTTGGAGAGACTCTGATGCATCTCCCTTGTGCCCATAAGTTCCATTCCAAATGCTTGAACCCATGGTTTGAAAATAATTCACATTGTCCATGTTGCAGAACTGCCATTATTTAA 567 0.4233 MAGILPGVECARRRRLHQSKGFLDLPSSTASSHNSTRRTSFGLYAANHEPLHSSSSPSLLHRSVIYQAQPDLSMVGEAREARQRLDDKFRSHRKLENKSIKCSENRQASIAELHTEVYGSKKSGSRRFNWSKLRWKASEQEDCAVCLELFKVGETLMHLPCAHKFHSKCLNPWFENNSHCPCCRTAII* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2244 188 SMART ring_2 143 183 IPR001841 -
Ahy3g2244 188 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 187 - -
Ahy3g2244 188 CDD RING-H2_PA-TM-RING 142 184 - -
Ahy3g2244 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 188 IPR013083 -
Ahy3g2244 188 SUPERFAMILY RING/U-box 130 187 - -
Ahy3g2244 188 Coils Coil 78 98 - -
Ahy3g2244 188 ProSiteProfiles Zinc finger RING-type profile. 143 184 IPR001841 -
Ahy3g2244 188 Pfam Ring finger domain 142 184 IPR001841 -
Ahy3g2244 188 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2244 Ahy-Chr3 77062588 77064111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2244 138 187 C3H Transcription Factor Family AT1G49850 58.000 2.79e-16 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2244 - - gmx:100527583 259.996